Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30468
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   9e-16
SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        29   3.6  
SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)                 29   3.6  
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)                   29   4.8  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 42/84 (50%), Positives = 56/84 (66%)
 Frame = +3

Query: 237 RKVKGEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFN 416
           ++ K EA KA + P    EKK    EE + PN+Y+K+RS AV ALK    ++ PYPHKF+
Sbjct: 43  KEAKQEASKA-KNPGQGEEKKKEIDEESLDPNQYFKIRSLAVEALKK--TDEPPYPHKFH 99

Query: 417 VSISLEEFIEKYQNLNNGDVLENV 488
           VSISL +FI+KYQ+  NG   E+V
Sbjct: 100 VSISLNDFIQKYQDTENGTWSEDV 123



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = +2

Query: 509 VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFFKDTDKFRRGDIIGCVGHPGKT 688
           +H+ R SG+KL+FYDLR EG+K+QVMA A+   +E  F    DK RRGDIIG  G PGKT
Sbjct: 605 IHAKRASGSKLLFYDLRGEGSKLQVMADAR--ASEQDFNAVHDKIRRGDIIGVKGKPGKT 662

Query: 689 KKGEL 703
           KKGEL
Sbjct: 663 KKGEL 667



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 202 SKGELKRRLKAEEKLREKPKKLHNSRS 282
           +  ELKRRLK+E+K +EK  K   S++
Sbjct: 26  NSSELKRRLKSEKKAKEKEAKQEASKA 52


>SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 376 FFRAATAPDRNL*YSLGLISSSCLDGFFSAATTGCCEAFSASP 248
           +F  A+ PD ++   +G  S +C+ GF+  A      A +  P
Sbjct: 49  YFGCASCPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPP 91


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 372 KNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVA 503
           +NG++ ++    K  +++S +E+IEK Q   NG +   V+L  A
Sbjct: 349 ENGIENENK---KRKINLSYQEWIEKVQKKRNGGITRKVSLKQA 389


>SB_14134| Best HMM Match : Hormone_3 (HMM E-Value=2.3)
          Length = 683

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 276 PVVAAEKKPSKQEEEISPNEYYKLRSGAVAAL 371
           P++ A+ +P K  E+++ +EYY L  G V  L
Sbjct: 33  PLIPAKARPQKGTEKLNGDEYYSLFVGGVHRL 64


>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
          Length = 984

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 376 FFRAATAPDRNL*YSLGLISSSCLDGFFSAATTGCCEAFSASP 248
           +F  A+ PD ++   +G  S +C+ GF+  A      A +  P
Sbjct: 191 YFVCASCPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPP 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,814,910
Number of Sequences: 59808
Number of extensions: 297600
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)