Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30468
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 71 8e-13
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 71 8e-13
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 71 8e-13
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 31 1.1
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 30 1.8
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 30 1.8
AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical pr... 28 5.6
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 5.6
U80023-7|AAG24034.1| 145|Caenorhabditis elegans C-type lectin p... 27 9.8
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 70.9 bits (166), Expect = 8e-13
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 446 KVSELEQRRCFGKRHFVSGW*VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFF 625
K + LE+ + + V+G +HS RESG+KL+FYD+ EG IQ+MA+A+ + + F
Sbjct: 33 KYTPLEKEQVVEEIVSVAGR-IHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFV 91
Query: 626 KDTDKFRRGDIIGCVGHPGKTKKGEL 703
D+ +RGDI+G G +TK GEL
Sbjct: 92 TLHDRIKRGDIVGFTGRATRTKAGEL 117
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +3
Query: 390 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGR 509
D+P+PHKFNV+ISL +FI KY L V+E + +SVAGR
Sbjct: 14 DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGR 52
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 70.9 bits (166), Expect = 8e-13
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 446 KVSELEQRRCFGKRHFVSGW*VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFF 625
K + LE+ + + V+G +HS RESG+KL+FYD+ EG IQ+MA+A+ + + F
Sbjct: 115 KYTPLEKEQVVEEIVSVAGR-IHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFV 173
Query: 626 KDTDKFRRGDIIGCVGHPGKTKKGEL 703
D+ +RGDI+G G +TK GEL
Sbjct: 174 TLHDRIKRGDIVGFTGRATRTKAGEL 199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = +3
Query: 252 EAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 431
E + A VA K ++ + P EY+ +R + A + D+P+PHKFNV+ISL
Sbjct: 52 EKDAAKLNVAVADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISL 109
Query: 432 EEFIEKYQNLNNGDVLENVTLSVAGR 509
+FI KY L V+E + +SVAGR
Sbjct: 110 TDFITKYTPLEKEQVVEEI-VSVAGR 134
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 70.9 bits (166), Expect = 8e-13
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 446 KVSELEQRRCFGKRHFVSGW*VHSIRESGAKLIFYDLRAEGAKIQVMASAQLYETEDKFF 625
K + LE+ + + V+G +HS RESG+KL+FYD+ EG IQ+MA+A+ + + F
Sbjct: 91 KYTPLEKEQVVEEIVSVAGR-IHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFV 149
Query: 626 KDTDKFRRGDIIGCVGHPGKTKKGEL 703
D+ +RGDI+G G +TK GEL
Sbjct: 150 TLHDRIKRGDIVGFTGRATRTKAGEL 175
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = +3
Query: 252 EAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 431
E + A VA K ++ + P EY+ +R + A + D+P+PHKFNV+ISL
Sbjct: 28 EKDAAKLNVAVADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISL 85
Query: 432 EEFIEKYQNLNNGDVLENVTLSVAGR 509
+FI KY L V+E + +SVAGR
Sbjct: 86 TDFITKYTPLEKEQVVEEI-VSVAGR 110
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 240 KVKGEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHP 398
++ + E ++ +P++++ + +E PN Y LR AV + K K D P
Sbjct: 352 QIPAKLEISTPKPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSP 404
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 228 ES*RKVKGEAEK---ASQQPVVAAE--KKPSKQEEEISPNEYYKLRSGAVAA 368
E +K K EA+ S PVVA +KP+K+ E+++P K RS VAA
Sbjct: 452 EEKKKAKLEAKNIPSTSGTPVVAQTVVQKPAKKSEKVTPKCQSKRRSETVAA 503
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +3
Query: 252 EAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 431
+ EK Q PVV+ +K+ K+ +S +K + V A+KN L + + +K V+ +
Sbjct: 386 DTEKWKQLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVKNNLTLNEQF-NKVRVTNYM 444
Query: 432 EEFIEKYQNLNNGDVLENVT 491
F + + VLE+VT
Sbjct: 445 TNFQRQGPCSDPPTVLESVT 464
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +3
Query: 252 EAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 431
+ EK Q PVV+ +K+ K+ +S +K + V A+KN L + + +K V+ +
Sbjct: 1099 DTEKWKQLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVKNNLTLNEQF-NKVRVTNYM 1157
Query: 432 EEFIEKYQNLNNGDVLENVT 491
F + + VLE+VT
Sbjct: 1158 TNFQRQGPCSDPPTVLESVT 1177
>AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical
protein B0545.3 protein.
Length = 258
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 337 YSLGLISSSCLDGFFSAATTGCCEA 263
YS+G ++S+C +G F +TG C A
Sbjct: 224 YSVGDVASACSEGTFGDPSTGLCVA 248
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 216 ETKVES*RKVKGEAEKASQQPVVAAEKKPSKQEEEISPNE 335
E K E K K E EK ++P EKK +Q+EE+ E
Sbjct: 297 EEKKEEVEK-KEEDEKKDEEPKKEEEKKEEEQKEEVEKKE 335
>Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical
protein C16C10.2 protein.
Length = 262
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 163 KVIGRCTNLSTAVSKGELKRRLKAEEKLREKPKKLHNSRS 282
K + R L V K ELK++L A K KP+K+ +++
Sbjct: 209 KRVERAKELQVVVDKLELKKQLAAGSKSELKPQKVKKAKA 248
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +3
Query: 261 KASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEF 440
+A +P++ A K + + I+ +R G ++ NGL+E+ Y H + +S
Sbjct: 1610 RAVSEPMIQAANKLAVLDVSIT------MRGGLGISVVNGLQEELIYAHFGGIVVSARRV 1663
Query: 441 IEKYQNLNNGDVLE 482
+ YQ + DV++
Sbjct: 1664 DKTYQMTGSVDVIQ 1677
>U80023-7|AAG24034.1| 145|Caenorhabditis elegans C-type lectin
protein 46 protein.
Length = 145
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 319 SSSCLDGFFSAATTGCCEAFSASPLTFLQLS 227
S C GF S ATTG C +PL++ S
Sbjct: 18 SMDCPTGFTSIATTGQCLKIIVAPLSYSDAS 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,910
Number of Sequences: 27780
Number of extensions: 245111
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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