Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30468
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             29   0.043
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.70 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.9  

>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
 Frame = +3

Query: 249 GEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSIS 428
           G + +A  QP+    K+  K+ ++        + + A   LKN      P    +NV++ 
Sbjct: 55  GSSNEALPQPI---SKRKDKEHKKKKSKTILAVNAEADITLKNA--GTPPEAVSYNVAVP 109

Query: 429 LEEFIEKYQNL--------NNGDVLENVTLSVAGRFTPLEN 527
            +  +EK   L        +NGD + +V   +A R  PL++
Sbjct: 110 TKSILEKKPELVDATDPGEHNGDTVTDVEAGLASRTNPLDD 150


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 113 LLNTHFFEIFSVELSAMAIGLNSLNLNIDIKIQLECL 3
           L  +H  +   ++L  +    N  N++ID+K+  EC+
Sbjct: 83  LEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSECI 119


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
 Frame = +3

Query: 249 GEAEKASQQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSIS 428
           G + +A  QP+    K+  K+ ++        + + A   LKN      P    +NV++ 
Sbjct: 55  GSSNEALPQPI---SKRKDKEHKKKKSKTILAVNAEADITLKNA--GTPPEAVSYNVAVP 109

Query: 429 LEEFIEKYQNL-------------NNGDVLENVTLSVAGRFTPLEN 527
            +  +EK  ++             +NGD + +V   +A R  PL++
Sbjct: 110 TKSILEKKPDVTTVELVDATDPGEHNGDTVTDVEAGLASRTNPLDD 155


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 91 KFFQWNFLPWLSDLIH 44
          KF  WN  P  SDL+H
Sbjct: 28 KFLGWNVPPEYSDLVH 43


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 585 WLVHNCMKQKISFLKILIN 641
           W+  NC+   I  + I++N
Sbjct: 121 WIAFNCLSDTIFLIDIVVN 139


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 585 WLVHNCMKQKISFLKILIN 641
           W+  NC+   I  + I++N
Sbjct: 121 WIAFNCLSDTIFLIDIVVN 139


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 585 WLVHNCMKQKISFLKILIN 641
           W+  NC+   I  + I++N
Sbjct: 121 WIAFNCLSDTIFLIDIVVN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,774
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)