Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30467
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    32   0.11 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.6  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 654  KCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPGLLMRVCGMTM 794
            K +   E+GP+  A +  +T+ D + ++A   + +P + MR+C  T+
Sbjct: 1114 KLLQLAESGPAAEAANRAITLGDRNPHDAFEIEYDPHVEMRICPKTL 1160


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 522 IVFVVRPGAWPRSRLWFGWRGTFFILITG 436
           I+  V   +W  S+LWF +   FFI+ITG
Sbjct: 207 ILLAVSILSWIASKLWFRFFILFFIIITG 235


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 781  HTLINKPGSILGATALFSSSSGIVTNSSFAEPEGPASSGST 659
            +TL  +P +   ++ L  S S I TNS   +PE   SS +T
Sbjct: 950  NTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTT 990


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 790 VIPHTLINKPGSILGATALFSSSSGIVT--NSSF 695
           VI +TLIN   S    T L SSSS +VT   SSF
Sbjct: 302 VITYTLINSVTSSSETTNLPSSSSSLVTIGESSF 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,027
Number of Sequences: 5004
Number of extensions: 62542
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)