Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30467
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1036 + 9021395-9021658,9024214-9024690                           33   0.20 
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    32   0.47 
11_06_0730 - 26728241-26729335,26729998-26730660                       29   3.3  

>07_01_1036 + 9021395-9021658,9024214-9024690
          Length = 246

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 274 KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
           +M  ++  I+ + DVS+  LR  + +MY  E  + ++  +  +  AE+ +VK L
Sbjct: 102 EMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASDLLVLAEKYEVKNL 155


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 259 FQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 390
           F +MF   M  +    VF +DV   A   L+QFMY GE+ V  EE+
Sbjct: 377 FDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422


>11_06_0730 - 26728241-26729335,26729998-26730660
          Length = 585

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = -2

Query: 691 EPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLESRSVSNLVITDCLC 512
           EP+G +S    H   A   C+   +   I  L  L  A G+   L SRS + L I+   C
Sbjct: 106 EPQGSSSKWHPHIDDAIHACKTSWIGRCITTL--LEWAQGLYRSLRSRSAALLPISCSRC 163

Query: 511 CTTWGLASKSALVWMAWNFLHFDY 440
           C   G AS S L  ++     FD+
Sbjct: 164 C---GSASDSLLERLSCLSRQFDF 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,574
Number of Sequences: 37544
Number of extensions: 395529
Number of successful extensions: 1251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)