Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30467
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.051
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0) 32 0.48
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37) 31 0.83
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 1.1
SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0) 31 1.5
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 30 1.9
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0) 30 2.5
SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 3.4
SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 3.4
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 3.4
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18) 29 4.4
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 29 5.9
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 28 7.7
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 YFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 423
YF MF ++ ++ I+ +KD+ ++ L++F Y G V + E + + ++TA LQ
Sbjct: 36 YFYAMFNGELAESKQKIITMKDILPDYMQVLVEFAYTGRVEITVENVQNLLATASLLQ 93
>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 587
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 256 YFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVK 429
YF +F +M P V L+++ S + +L ++Y GE+ V + I++A L +
Sbjct: 54 YFYGLFTSEMIEKNAPSVKLQELRASVMNHILTYLYTGEITVTELNAEDLIASANYLLIP 113
Query: 430 GLTG 441
L G
Sbjct: 114 RLKG 117
>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
Length = 521
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 YFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 426
YF+ +F + + V ++ + LL F+Y G +NV +E + + A+ LQ+
Sbjct: 58 YFEVLFSGGLRESYLDTVTIQGIDSETFSALLDFIYTGVINVNEENVQQLLPAAKMLQL 116
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 YFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 426
YF+ MF +M ++ + ++DV SA+ L+ F Y + +++ + + + A LQ+
Sbjct: 83 YFRAMFTREMAESRQAEITIRDVDESAMNLLITFAYTASITIEETNVQTLLPAACLLQL 141
>SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 481
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 256 YFQEMFKMNPTQ--HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVK 429
YFQ MF + V L+DV A+ L+ F Y G++++ E + S + + Q+
Sbjct: 71 YFQAMFTGGLVESFEDSVTLRDVDSGAVELLVDFAYTGKLDITTENVQSIMYASSLFQLN 130
Query: 430 GL 435
+
Sbjct: 131 AI 132
>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 256 YFQEMFKMNP---TQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 426
YF+ MF N TQ I L D+ AL+ ++++ Y G++ + ++ + + + LQV
Sbjct: 57 YFRAMFTSNLLECTQRTIT-LYDIDVGALQQIVEYFYTGKITIDEDNVQFLLHASCLLQV 115
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 489 EARPQVVQQRQSVMTKLETDLDSKPSSTPVAVKR 590
+A+PQ+V +R+S+++ T S+PS+T V R
Sbjct: 458 QAKPQLVTKRESIVSNETTKATSRPSATVSKVTR 491
>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 628
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/53 (20%), Positives = 30/53 (56%)
Frame = +1
Query: 277 MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
M+ ++ V L+++ A+++++ F Y G++ + + + + A LQV+ +
Sbjct: 66 MSESRQDTVTLQELDEKAMQNMIDFFYSGKIEISELNVQEVLPIACLLQVQSV 118
>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 571
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 256 YFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQL 420
+F +F M Q V LK + + DLL ++Y G++ V + F++ A+ L
Sbjct: 45 FFNGLFSSSMRERQENTVNLKQFPVNIMEDLLTYLYTGKLEVTEATAQDFLAAADFL 101
>SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 595
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 256 YFQEMFKMN-PTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 390
YF MF + T V +++++ +A+ LL F+YQG++ + +E +
Sbjct: 58 YFMAMFSGHMATVDRTVVVQEITSTAMEVLLAFIYQGKLLITEENV 103
>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 590
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 256 YFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVK 429
YF MF M + +V + V+ ++R +L F+Y GE+ + + + + A + V+
Sbjct: 58 YFFAMFNGNMKESSQDVVTITGVTPDSMRSILNFIYTGEIVLDWDNVELILQGANLMLVQ 117
Query: 430 GL 435
+
Sbjct: 118 SV 119
>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 664 IHWKQVPLVLQKTNL*RYQTK 726
+H++ +P V+QKTNL RY K
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44
>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
Length = 686
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 246 TDRTNLCACNNCLRQPTLRLRDLH 175
TD+ +L CN L++ T +L DLH
Sbjct: 62 TDKRSLAQCNAILKESTSKLNDLH 85
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 746 SDSIVLIFVWYRHKFV--FCRTRGTCFQWIYAFSFR 645
+D + L+FV ++ F+ F G CF + +AF+FR
Sbjct: 641 ADLLTLLFVSPQYVFIHTFVHPIGECFSFFFAFAFR 676
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 604 Q*HQITLLPHKVDQRNENA*IHWKQVPLVLQKTNL*RYQTKMR 732
Q H+I+L HK R + + PL KT L +Y+T +R
Sbjct: 103 QQHKISLQQHKTRLRQHKTPLRQHKTPLRQHKTPLRQYKTPLR 145
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 35 PTGIISTKLRIGSTSSRRYHGVGRTIFTMLEQFPRKYVSRLSWPAVAWRSR 187
P ++ST++ G + R YH + + E F ++ ++R S V R
Sbjct: 108 PQSLVSTQILSGKLNERSYHQTMHQLLFVEEVFMKQQIARFSMERVTLLGR 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,554,753
Number of Sequences: 59808
Number of extensions: 462656
Number of successful extensions: 1235
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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