Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30467
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +1

Query: 259 FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 426
           F E F      +    + D    ++R +  +MY GE+++ +  +A  ++ A  L+V
Sbjct: 60  FSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRV 115


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 361 GEVNVKQEELASFISTAEQLQVKGLTGNQ 447
           G    K EE+  +I  ++++  +GLTGNQ
Sbjct: 650 GPTKQKLEEVLDYIGCSQKINYQGLTGNQ 678


>AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical
           protein Y75B12B.4 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 256 YFQEMFKMNPTQHPIVFLK--DVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQV 426
           +FQ+MF  N  +     +K  DV+HS   DLL  +Y   + +    ++  +  +++  V
Sbjct: 184 FFQKMFYSNFAEKTQAEIKIDDVTHSEFIDLLNVIYPTHMLINSSNVSHLLKLSDRFAV 242


>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 705 FVTIPDEDENNAVAPKMEPGLLMRVC 782
           F+   D   NN+  P M+PGL+ R+C
Sbjct: 36  FLISLDFFSNNSKKPNMDPGLVCRIC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,652,047
Number of Sequences: 27780
Number of extensions: 352917
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)