Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30467
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      74   1e-15
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          63   3e-12
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   8e-05
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.62 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 74.1 bits (174), Expect = 1e-15
 Identities = 32/61 (52%), Positives = 45/61 (73%)
 Frame = +1

Query: 256 YFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
           YF+E+ K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GL
Sbjct: 56  YFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGL 115

Query: 436 T 438
           T
Sbjct: 116 T 116



 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 93  MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGSYCK 224
           M   + F L WNN+ +++++ F  L    D VDVTLA +G   K
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLK 44



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 197 VGCRRQLLQAHKLVLSVCSPIFKKCSK 277
           + C  + L+AH++VLS CSP F++  K
Sbjct: 36  LACDGRSLKAHRVVLSACSPYFRELLK 62


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 63.3 bits (147), Expect = 3e-12
 Identities = 26/61 (42%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = +1

Query: 256 YFQEMFKMNPTQHPIVFL-KDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKG 432
           YFQ++   NP +HP + + +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KG
Sbjct: 60  YFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKG 119

Query: 433 L 435
           L
Sbjct: 120 L 120



 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 105 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGSYCK 224
           + + L WNN+ +NM++ FH LL     VDVTLA   +  K
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLK 48



 Score = 30.3 bits (65), Expect = 0.022
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 197 VGCRRQLLQAHKLVLSVCSPIFKK 268
           + C    L+AHK+VLS CS  F+K
Sbjct: 40  LACNEASLKAHKVVLSACSSYFQK 63


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 93  MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 209
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 456
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 458 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 360
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 69  VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 200
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 796 FIVIPHTLINKPGSILGATALFSSSSGIVTNSSFAEPEG 680
           F+V P  ++  PGS + +   F     I  +S F   EG
Sbjct: 360 FLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEG 398


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 796 FIVIPHTLINKPGSILGATALFSSSSGIVTNSSFAEPEG 680
           F+V P  ++  PGS + +   F     I  +S F   EG
Sbjct: 413 FLVYPSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEG 451


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 696 KDEFVTIPDEDENNAVAPKMEPGLLMR-VCGMT 791
           KD   +I  ++EN   +   +PGL+   V G+T
Sbjct: 80  KDSIHSIDGDEENGLTSESTDPGLVAGIVIGVT 112


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 70  FHVESSLSWRRTNNFHY 120
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,874
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)