Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30467
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 34 0.13
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 34 0.13
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 32 0.52
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 32 0.52
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 30 1.6
At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM ... 29 3.6
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r... 28 8.4
At1g28530.1 68414.m03508 expressed protein 28 8.4
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 271 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 450
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 451 EE 456
EE
Sbjct: 296 EE 297
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 259 FQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 378
F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 378 FAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 271 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 450
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 451 EE 456
EE
Sbjct: 296 EE 297
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 259 FQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 378
F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 378 FAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 301 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
+ L D+SH L+ LL+F+Y G + + S A++ + L
Sbjct: 68 ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 301 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
+ L D+SH L+ LL+F+Y G + + S A++ + L
Sbjct: 68 ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 307 LKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 435
+ DVS+ ALR + ++Y E + ++ + +E+ QVK L
Sbjct: 112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHL 154
>At2g32100.1 68415.m03924 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 244
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 784 PHTLINKPGSILGATALFSSSSGIVTNSSFAEPEGPASSGSTHFRFAGP 638
PH +I+ P S T +SSS + S P+ A+ S F F+ P
Sbjct: 62 PHRVIDLPSSSTTTTPAATSSSSTSSYESDISPDVSAAFASRRFFFSSP 110
>At5g10720.1 68418.m01242 sensory transduction histidine
kinase-related similar to Sensor protein rcsC (Capsular
synthesis regulator component C) (SP:Q56128) {Salmonella
typhi}; sensory transduction histidine kinase slr1759,
Synechocystis sp., PIR:S75142
Length = 950
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 771 LTNLVPFWERQHCSHLRLVSSQIRLLQNQRD 679
LTNLV WE + +RL+ +++ L QR+
Sbjct: 72 LTNLVKQWEYMQDNAVRLLKEELKNLDRQRE 102
>At1g28530.1 68414.m03508 expressed protein
Length = 614
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 32 SPTGIISTKLRIGSTSSRRYHGVGRTIFTMLEQFPRK-----YVSRLSWPAVAWRSRRRN 196
+P +ST + S+ R + I Q K Y+ + +P + W S+RR
Sbjct: 193 NPREQVSTSFTLSSSDERVISVIAEVICISALQSTEKHFLDDYLGKAKFPFMKWLSKRRR 252
Query: 197 VGCRRQLLQAHKL 235
+ R + HKL
Sbjct: 253 IASRDCSVVLHKL 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,060
Number of Sequences: 28952
Number of extensions: 327081
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -