Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30466
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.2  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 157 LNVNQWHW 180
           LN++ WHW
Sbjct: 203 LNLHHWHW 210


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 210 APPNEKPEIVKTHLR 254
           A PN KP+  + HLR
Sbjct: 134 ASPNRKPDDNQDHLR 148


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 225 KPEIVKTHLRT 257
           +P  +KTHLRT
Sbjct: 5   RPSTLKTHLRT 15


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 225 KPEIVKTHLRT 257
           +P  +KTHLRT
Sbjct: 261 RPSTLKTHLRT 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,588
Number of Sequences: 336
Number of extensions: 2028
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)