Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30466
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   136   1e-32
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   100   8e-22
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    28   5.5  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    27   7.2  
05_01_0213 - 1606383-1606816,1607695-1608355                           27   9.6  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  136 bits (329), Expect = 1e-32
 Identities = 60/66 (90%), Positives = 64/66 (96%)
 Frame = +2

Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
           L NMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPGIGATHSS
Sbjct: 345 LRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS 404

Query: 428 RFIPLK 445
           RFIPLK
Sbjct: 405 RFIPLK 410



 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 46/95 (48%), Positives = 55/95 (57%), Gaps = 21/95 (22%)
 Frame = +3

Query: 33  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---- 200
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 201 -----------------KKEAPPNEKPEIVKTHLR 254
                            KK+AP  EKPE V+THLR
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLR 346


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  100 bits (239), Expect = 8e-22
 Identities = 43/49 (87%), Positives = 47/49 (95%)
 Frame = +2

Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 394
           L NMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 196 LRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 46/74 (62%), Positives = 55/74 (74%)
 Frame = +3

Query: 33  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 213 PPNEKPEIVKTHLR 254
           P  EKPE V+THLR
Sbjct: 184 PAGEKPEPVRTHLR 197


>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 197 RQERGSSE*EARDREDSLENMIIVPEMVGSIVGIYNGKTFNQVEIK 334
           R    S+E   RDR + LEN +   +  G ++ I   + F  +E++
Sbjct: 327 RNSNYSTEDPTRDRSNQLENSLEKSQNHGDVLQIVENRQFTYIELE 372


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWS 183
           E+I I  L+C + S  WN  + + A  ++ +  VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 402 PVSVLHTAQGSFRSSRASKTTSRLSVT 482
           PVSVLH    S  SS +S TT+  + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,339
Number of Sequences: 37544
Number of extensions: 253393
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)