Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30466
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 135 2e-32
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 135 2e-32
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 132 1e-31
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 132 1e-31
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 130 6e-31
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 93 1e-19
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 66 1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 2e-05
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.6
At5g47225.1 68418.m05823 hypothetical protein 27 6.1
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 8.0
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 135 bits (327), Expect = 2e-32
Identities = 58/66 (87%), Positives = 64/66 (96%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
L NMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 428 RFIPLK 445
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 213 PPNEKPEIVKTHLR 254
P EKPE V+THLR
Sbjct: 75 PAGEKPEPVRTHLR 88
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 135 bits (327), Expect = 2e-32
Identities = 58/66 (87%), Positives = 64/66 (96%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
L NMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 428 RFIPLK 445
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 213 PPNEKPEIVKTHLR 254
P EKPE V+THLR
Sbjct: 75 PQGEKPEPVRTHLR 88
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 132 bits (320), Expect = 1e-31
Identities = 57/66 (86%), Positives = 64/66 (96%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
L NMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 84 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 143
Query: 428 RFIPLK 445
RFIPLK
Sbjct: 144 RFIPLK 149
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/74 (58%), Positives = 51/74 (68%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
KKR F+KF++RGVDLD LLDM E L++ GL RKPMAL+KKLR+AK EA
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 213 PPNEKPEIVKTHLR 254
P EKP V+THLR
Sbjct: 72 PAGEKPASVRTHLR 85
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 132 bits (319), Expect = 1e-31
Identities = 56/66 (84%), Positives = 64/66 (96%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
L NMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 85 LRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 144
Query: 428 RFIPLK 445
RFIPLK
Sbjct: 145 RFIPLK 150
Score = 89.8 bits (213), Expect = 1e-18
Identities = 43/74 (58%), Positives = 52/74 (70%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
KKR F+KF++RGVDLD LLDM + L++L GL RKPMAL+KKLR+AK EA
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 213 PPNEKPEIVKTHLR 254
P EKP V+THLR
Sbjct: 73 PAGEKPAAVRTHLR 86
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 130 bits (314), Expect = 6e-31
Identities = 54/66 (81%), Positives = 63/66 (95%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 427
L NM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSS
Sbjct: 87 LRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSS 146
Query: 428 RFIPLK 445
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 97.9 bits (233), Expect = 4e-21
Identities = 45/76 (59%), Positives = 56/76 (73%)
Frame = +3
Query: 27 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 206
L KKR F+KF+++GVDLD LLDMP + L+EL GL RKPMAL+KKLR+AK
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 207 EAPPNEKPEIVKTHLR 254
+AP EKPE+V+THLR
Sbjct: 73 DAPAGEKPEVVRTHLR 88
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 92.7 bits (220), Expect = 1e-19
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 4/70 (5%)
Frame = +2
Query: 248 LENMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA---- 415
L NMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I
Sbjct: 91 LRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCF 150
Query: 416 THSSRFIPLK 445
S+RFIPL+
Sbjct: 151 RRSTRFIPLR 160
Score = 78.6 bits (185), Expect = 2e-15
Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 212
KKR F+KF++RG ++D LL M N L +L + GLK++P+ L+KKLRRAKKEA
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 213 PPNE--KPEIVKTHLR 254
KPE+VKTHLR
Sbjct: 77 SDENKMKPEVVKTHLR 92
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +3
Query: 33 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 206
KKRIF+KF++RGVDLD LLDM E L++ G RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2
Query: 263 IVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 400
I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 165 ILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 329 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 430
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At5g47225.1 68418.m05823 hypothetical protein
Length = 351
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 1 ETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 117
E W R+ + + + SL G+ I ++S IC + SW+
Sbjct: 173 EVWRRANRREEQPEGTKPSLEGQHIDMASPICFIDGSWH 211
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 137 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 30
A TG H F E+L+G + K +I + V LPE L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,614,085
Number of Sequences: 28952
Number of extensions: 198476
Number of successful extensions: 499
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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