Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30465
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0037 - 604001-604957 37 0.020
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 33 0.33
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 31 1.0
04_04_1672 - 35242468-35243235,35243481-35243645 30 2.3
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 29 4.1
06_03_0088 + 16469006-16469189,16469664-16469797 29 5.4
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 29 5.4
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 28 7.1
01_07_0206 + 41990251-41992032,41992131-41992361 28 7.1
01_06_1724 - 39452858-39454309 28 7.1
12_02_1267 - 27448871-27450445 28 9.4
11_03_0049 - 9318578-9319312 28 9.4
05_04_0259 + 19494629-19495394,19495408-19495949 28 9.4
04_03_0028 + 9698427-9698849,9698862-9699227 28 9.4
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 9.4
>09_01_0037 - 604001-604957
Length = 318
Score = 36.7 bits (81), Expect = 0.020
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 107 SVRQSLAQRFDFQTIQHGCAG*SRAHHTGLLVE---PLFSISSRGNPLLPTTFTAGVPQG 277
++ + LA R D H + R HH+ LL + PL +S G+P L + G P G
Sbjct: 92 TIARLLAGRTDNAIKNHWNSTLKRKHHSSLLADDLRPLKRTTSDGHPTLSSAAAPGSPSG 151
Query: 278 XXXXXXXXXXXXNDIPRSPPTHLAL 352
+ +P SPP HL L
Sbjct: 152 SDLSDSSHHSLPSQMPSSPP-HLLL 175
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = -1
Query: 280 RALRDSSC---EGRGEERVPSTRYRKER-FDKKSRM-MSTRLSGTPMLNSLKIKPLCQTL 116
R+ DS C EG EE+ ++ +K FD + + M T SG +NS+ ++P+ + +
Sbjct: 525 RSRGDSICSFGEGSDEEQQETSNNKKTNGFDNTAAVSMDTLKSGDDSMNSVVVEPIKERV 584
Query: 115 SNAFATSKKRAPVYNGFGRLS 53
++ AP Y+ RLS
Sbjct: 585 ESSKTDVDTAAPFYSFVKRLS 605
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 160 VCRIVSCSSYGTSCRTALFDIESREPAPPHDLHSWSPARL 279
+C VS S+ G CR D+E P PP +H +PARL
Sbjct: 653 ICSPVS-SNGGEGCR----DVERTNPVPPRFIHKATPARL 687
>04_04_1672 - 35242468-35243235,35243481-35243645
Length = 310
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 464 DINPAKSTAVLFQRGAPHGFPPVLGGGIS-HPRLLSLVNPYPGPGRSSTWAL 616
DI+ + A + G P +P LG S P L LVN PGPG SS AL
Sbjct: 106 DISALATRAAVVLSGGPT-YPVPLGQLDSLAPAPLRLVNQLPGPGTSSVQAL 156
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 178 TRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLSP 50
T LS +P L+ L +KP A T+K V G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178
>06_03_0088 + 16469006-16469189,16469664-16469797
Length = 105
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 624 IQGNAQVLDLPGPGYGLTKESNRGCEIPPPNTGGNP 517
++ NA +L P G +T +++ C PP GGNP
Sbjct: 39 LEDNAIILVHPSRGQAVTSDTS--CGTKPPKLGGNP 72
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 443 WFRKWRIDINPAKSTAVLFQRGAPHGFPPVLGGGISHP 556
W R+WR + V +RG P P GGG+ P
Sbjct: 57 WIRRWRRRGGWFRPPPVRIRRGRPSSDPRRRGGGVRRP 94
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 181 SSYGTSCRTALFDIESREPAPPHDLHSWSPARLCPLTPP 297
SS GTS + F ++ ++P PP L +W P P PP
Sbjct: 239 SSRGTSPSPSSFPLKQQQPPPP-QLFNW-PGHAPPQLPP 275
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 377 YSSRNKSLIAKKLQSAALALGQWFRKWR 460
Y + +K+ ++K+ + + L LGQW WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299
>01_06_1724 - 39452858-39454309
Length = 483
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 600 QVPGRYPGCIDDIPPAYKISP*PCRVY 680
QVPG++P CI AY++ P PC Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354
>12_02_1267 - 27448871-27450445
Length = 524
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 544 SSS*YGRKSVWSSPLKEHRSTF 479
S+S Y RKSVWS EH +TF
Sbjct: 188 STSYYSRKSVWSHVPFEHPATF 209
>11_03_0049 - 9318578-9319312
Length = 244
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 317 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 448
D+P +PP ++A D Y R+K ++ + + G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191
>05_04_0259 + 19494629-19495394,19495408-19495949
Length = 435
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 413 LQSAALALGQWFRKWRIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGP 592
L + ++ ++ RK+ + + PA+S+ V+ AP+ F PV+ S LVNP
Sbjct: 195 LPTQVASIFRFSRKFALCLAPAESSGVVVFGDAPYEFQPVMDLSKSLIYTPLLVNPVTTT 254
Query: 593 G 595
G
Sbjct: 255 G 255
>04_03_0028 + 9698427-9698849,9698862-9699227
Length = 262
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 145 LKIKPLCQTLSNAFATSKKRAPVY--NGFGRLSP 50
L++KPL Q L NAF K APV F ++ P
Sbjct: 226 LELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 213 FRYRVE-GTRSSPRPSQLESRKALSSHPSYLAYSLTIFPGRRRPI*LYSP 359
F Y V+ R S +++ +K + +PS L+ S F GR+ LYSP
Sbjct: 232 FHYNVDISPRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,614,545
Number of Sequences: 37544
Number of extensions: 566884
Number of successful extensions: 1673
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -