Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30465
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 38 0.010
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 35 0.055
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 33 0.17
AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode ast... 31 1.2
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 30 2.1
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 30 2.1
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 29 2.7
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 29 2.7
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 29 2.7
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 29 2.7
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 29 2.7
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 29 3.6
AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical ... 29 3.6
AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical ... 29 3.6
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 29 3.6
AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein. 29 3.6
AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein. 29 3.6
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 29 3.6
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 29 3.6
U70845-5|AAB09103.1| 219|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/53 (41%), Positives = 37/53 (69%)
Frame = +3
Query: 87 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSS 245
++ D +KAFD++ H+ L+ KL ++ +L++ + +FLSNRSFR R+ T SS
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSS 69
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 TAGVPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAAL 430
T GVPQG NDI P +A FADDT +Y +S K+ LQSA
Sbjct: 74 TCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLY-ASTPKTESENNLQSALD 132
Query: 431 ALGQWFRKWRIDINPAKSTAV 493
A+ W + ++ +N +K+ V
Sbjct: 133 AVVDWTKGSKLTLNQSKTVHV 153
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +2
Query: 251 TFTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAAL 430
T GVPQG D+P T L +ADD ++ + A+K+Q
Sbjct: 528 TLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHID 587
Query: 431 ALGQWFRKWRIDINPAKSTAVLF 499
+ ++ ++ + I+ KST +F
Sbjct: 588 EIAKYLKERGMSISAEKSTVTVF 610
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -2
Query: 321 ISLTNKLNRRGERTEPCGTPAVKVVG 244
ISLTN GERT+PCGTP +G
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLG 75
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 105 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRV 227
KAFD+V H+ L+ KL + G+ DFLS+R+F +V
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKV 42
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 607 LGVTLDASMTFRPHIKSV 660
LG+ D+ +TF+PHIK +
Sbjct: 198 LGILTDSKLTFKPHIKKI 215
>AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode
astacin protease protein30 protein.
Length = 710
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 350 LFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKS-TAVLFQRGAPHGFP 526
+F+D VY R K+ ++ ++ A + + ++ PA ++Q+ AP P
Sbjct: 20 IFSDAPPVYRQPRTKAEKIERFRNIARTFSPFV--YEVNTTPAPHFDNFIWQQNAPAVTP 77
Query: 527 -PVLGGGISHPRLLSLVNPYPGPG 595
P S P L ++ P PGPG
Sbjct: 78 EPFTFAPFSFPTLATVAPPAPGPG 101
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 6 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLI 185
S + +H L + VG PL +F D KAFD V H + L G + + +
Sbjct: 664 STIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDL 721
Query: 186 IRDFLSN 206
+++ N
Sbjct: 722 LKECYKN 728
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 6 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLI 185
S + +H L + VG PL +F D KAFD V H + L G + + +
Sbjct: 403 STIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDL 460
Query: 186 IRDFLSN 206
+++ N
Sbjct: 461 LKECYKN 467
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 6 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLI 185
S + +H L + VG PL +F D KAFD V H + L G + + +
Sbjct: 493 STIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDL 550
Query: 186 IRDFLSN 206
+++ N
Sbjct: 551 LKECYKN 557
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 558 RGCEIPPPNTGGNPC 514
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 558 RGCEIPPPNTGGNPC 514
R C +PPP GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 558 RGCEIPPPNTGGNPC 514
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 558 RGCEIPPPNTGGNPC 514
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical
protein H38K22.5b protein.
Length = 617
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical
protein H38K22.5a protein.
Length = 618
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein.
Length = 617
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein.
Length = 618
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 446 FRKW----RIDINPAKSTAVLFQRGAPHGFPPVLGGGISHPRLLSLVNPYPGPGRSSTWA 613
FR W R++I P +F++ +PH FP G + + LL + + + +
Sbjct: 367 FRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYK 426
Query: 614 L-PWMHR*HSA 643
+ P HR S+
Sbjct: 427 IAPQAHRMRSS 437
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 314 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 478
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 314 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 478
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>U70845-5|AAB09103.1| 219|Caenorhabditis elegans Hypothetical
protein F22H10.6 protein.
Length = 219
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 41 HSCGA*STKTVIHGSSLLRRRKSVRQSLAQRFDFQTIQHGC 163
HS S+ H SS +RR V + AQRF Q Q GC
Sbjct: 27 HSQNFKSSSICGHFSSTIRRYHHVSEREAQRFQQQLRQPGC 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,049
Number of Sequences: 27780
Number of extensions: 437793
Number of successful extensions: 1117
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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