Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30465
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25170.1 68417.m03624 expressed protein                             30   1.9  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    30   1.9  
At4g14713.1 68417.m02261 expressed protein                             29   3.4  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    29   4.5  
At4g32860.1 68417.m04677 expressed protein                             28   7.8  
At1g18090.2 68414.m02241 exonuclease, putative similar to Swiss-...    28   7.8  
At1g18090.1 68414.m02240 exonuclease, putative similar to Swiss-...    28   7.8  

>At4g25170.1 68417.m03624 expressed protein
          Length = 344

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 527 PVLGGGISHPRLLSLVNPYPGPGRSSTWALPWMHR*HS 640
           P  GGG   P    +V+  P  G  S W  P MH  HS
Sbjct: 156 PENGGGNQSPIATGMVHQVPSFGSDSDWMEPSMHLCHS 193


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -2

Query: 705 NHGVESTENKRGTVTD*FYMRAECHRCIQGNAQVLDLPGPGY--GLTKESNRGCEIPPPN 532
           NH    +  K  ++T  ++ R+E   CI G     DL G G   G+   +N G  +    
Sbjct: 527 NHSEVDSSGKSASITGGYFYRSETDPCIAGRYVYADLYGNGVWAGIETPANSGSFVTKRT 586

Query: 531 TGGNPCGAPL 502
           T      +P+
Sbjct: 587 TFSCASDSPM 596


>At4g14713.1 68417.m02261 expressed protein
          Length = 313

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 271 RDSSCEGRGEERVPSTRYRKERFDKK 194
           RDS  EG+   +V   RYR++R D+K
Sbjct: 225 RDSGMEGQANRKVSLQRYREKRKDRK 250


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 594 PGPGYGLTKESNRGCEIPPPNTGGNP 517
           P P YG    +N     PPPN GG P
Sbjct: 319 PPPNYGGAPPANNMGGAPPPNYGGGP 344


>At4g32860.1 68417.m04677 expressed protein
          Length = 193

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 SPRPSQLESRKALSSHPSYLAYSLTIFPGRR 335
           SP P QLE   + SS P   +Y+ T+  GRR
Sbjct: 81  SPVPLQLEYEFSCSSTPPRRSYATTVSKGRR 111


>At1g18090.2 68414.m02241 exonuclease, putative similar to
           Swiss-Prot:P53695 exonuclease I (EXO I)
           [Schizosaccharomyces pombe]
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 274 LRDSSCEGRGEERVPSTRYRKERFDKKSRMMSTRLSGT-PMLNSLKIKPLCQTLSNAFAT 98
           ++  S + R +E   +T            M + R+ GT P   + K+K  C++  N    
Sbjct: 504 IKQDSEKNRVKETFETTEVDLAEVQDHVNMTTKRVRGTKPRTENFKVKTSCKSSENNKTI 563

Query: 97  SKKRAPVYNGFGRL 56
            KK+  + + F RL
Sbjct: 564 IKKKHSILDFFQRL 577


>At1g18090.1 68414.m02240 exonuclease, putative similar to
           Swiss-Prot:P53695 exonuclease I (EXO I)
           [Schizosaccharomyces pombe]
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 274 LRDSSCEGRGEERVPSTRYRKERFDKKSRMMSTRLSGT-PMLNSLKIKPLCQTLSNAFAT 98
           ++  S + R +E   +T            M + R+ GT P   + K+K  C++  N    
Sbjct: 504 IKQDSEKNRVKETFETTEVDLAEVQDHVNMTTKRVRGTKPRTENFKVKTSCKSSENNKTI 563

Query: 97  SKKRAPVYNGFGRL 56
            KK+  + + F RL
Sbjct: 564 IKKKHSILDFFQRL 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,054,031
Number of Sequences: 28952
Number of extensions: 414642
Number of successful extensions: 1084
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)