Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30464
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             39   0.005
11_01_0023 - 162079-162402                                             39   0.005
01_05_0378 + 21628517-21628759                                         31   0.81 
12_01_0474 + 3718846-3719097                                           29   5.7  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -2

Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGAAAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 281 SPGVKVGPVL 252
           +PG+++ P +
Sbjct: 66  APGLRLSPTM 75



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 252 VLVMSLLFIASVFMLHIWGKYTRA 181
           VLVMSL FI  V  LH++GK  R+
Sbjct: 76  VLVMSLCFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -2

Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGASAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 281 SPGVKVGPVL 252
           +PG+++ P +
Sbjct: 66  APGLRLSPTM 75



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 252 VLVMSLLFIASVFMLHIWGKYTRA 181
           VLVMSL FI  V  LH++GK  R+
Sbjct: 76  VLVMSLCFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -1

Query: 258 SSVLVMSLLFIASVFMLHIWGKYTR 184
           +SVL+MS+ FIA V +LH++GK  R
Sbjct: 53  NSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 258 SSVLVMSLLFIASVFMLHIWGKYTR 184
           ++VL+MS+ F A V +LH++GK  R
Sbjct: 55  NAVLIMSIGFFAVVALLHVFGKLYR 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,248
Number of Sequences: 37544
Number of extensions: 265740
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)