Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30464
(804 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25085-1|AAA19706.1| 96|Homo sapiens Sec61-complex beta-subuni... 62 2e-09
CR542159-1|CAG46956.1| 96|Homo sapiens SEC61B protein. 62 2e-09
CR456883-1|CAG33164.1| 96|Homo sapiens SEC61B protein. 62 2e-09
BC001734-1|AAH01734.1| 96|Homo sapiens Sec61 beta subunit prot... 62 2e-09
AL137067-2|CAC08000.1| 96|Homo sapiens Sec61 beta subunit prot... 62 2e-09
AK223384-1|BAD97104.1| 96|Homo sapiens protein translocation c... 59 2e-08
>L25085-1|AAA19706.1| 96|Homo sapiens Sec61-complex beta-subunit
protein.
Length = 96
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>CR542159-1|CAG46956.1| 96|Homo sapiens SEC61B protein.
Length = 96
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>CR456883-1|CAG33164.1| 96|Homo sapiens SEC61B protein.
Length = 96
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>BC001734-1|AAH01734.1| 96|Homo sapiens Sec61 beta subunit
protein.
Length = 96
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>AL137067-2|CAC08000.1| 96|Homo sapiens Sec61 beta subunit
protein.
Length = 96
Score = 62.5 bits (145), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>AK223384-1|BAD97104.1| 96|Homo sapiens protein translocation
complex beta variant protein.
Length = 96
Score = 59.3 bits (137), Expect = 2e-08
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = -2
Query: 461 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 282
+PS T+VGS RSP+KA A A+G AG+G MWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNAGCGTRSAGRTTSAGTGRMWRFYTED 62
Query: 281 SPGVKVGPV 255
SPG+KVGPV
Sbjct: 63 SPGLKVGPV 71
Score = 52.4 bits (120), Expect = 2e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -1
Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
G VLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 69 GPVPVLVMSLLFIASVFMLHIWGKYTRS 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,343,769
Number of Sequences: 237096
Number of extensions: 1581940
Number of successful extensions: 2525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2519
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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