Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30464
         (804 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p pro...    69   1e-11
AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta pr...    69   1e-11
AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-P...    69   1e-11
AY118698-1|AAM50558.1|  570|Drosophila melanogaster AT19257p pro...    29   9.8  
AE014296-2960|AAN11700.1|  573|Drosophila melanogaster CG32181-P...    29   9.8  

>AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p
           protein.
          Length = 100

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 37/75 (49%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 470 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAG---SGGMW 300
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 299 RFYTDDSPGVKVGPV 255
           RFYTDDSPG+KVGPV
Sbjct: 61  RFYTDDSPGIKVGPV 75



 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -1

Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
           G   VLVMSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta
           protein protein.
          Length = 100

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 37/75 (49%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 470 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAG---SGGMW 300
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 299 RFYTDDSPGVKVGPV 255
           RFYTDDSPG+KVGPV
Sbjct: 61  RFYTDDSPGIKVGPV 75



 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -1

Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
           G   VLVMSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-PA
           protein.
          Length = 100

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 37/75 (49%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 470 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAG---SGGMW 300
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 299 RFYTDDSPGVKVGPV 255
           RFYTDDSPG+KVGPV
Sbjct: 61  RFYTDDSPGIKVGPV 75



 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -1

Query: 264 GASSVLVMSLLFIASVFMLHIWGKYTRA 181
           G   VLVMSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AY118698-1|AAM50558.1|  570|Drosophila melanogaster AT19257p
           protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 467 PQSPSATSVGSGSRSPTKASAGPRTASG 384
           PQ+P    V SG+R PT  S+   TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136


>AE014296-2960|AAN11700.1|  573|Drosophila melanogaster CG32181-PA
           protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 467 PQSPSATSVGSGSRSPTKASAGPRTASG 384
           PQ+P    V SG+R PT  S+   TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,720,111
Number of Sequences: 53049
Number of extensions: 470481
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)