Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30464
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    38   0.008
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    34   0.096
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    34   0.096
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    33   0.29 
At5g05870.1 68418.m00645 UDP-glucoronosyl/UDP-glucosyl transfera...    30   2.1  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 464 QSPSATSVGSGSRSPTKASAGPRTAS--GXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFY 291
           QS  +TS GS +  P  A+     A+  G                     +GS  M RFY
Sbjct: 7   QSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFY 66

Query: 290 TDDSPGVKVGPVL 252
           TDD+PG+K+ P +
Sbjct: 67  TDDAPGLKISPTV 79



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 252 VLVMSLLFIASVFMLHIWGK 193
           VL+MSL FI  V  LH++GK
Sbjct: 80  VLIMSLCFIGFVTALHVFGK 99


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 317 GSGGMWRFYTDDSPGVKVGP 258
           G+G M +FYTDD+PG+K+ P
Sbjct: 33  GAGTMLQFYTDDAPGLKISP 52


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 317 GSGGMWRFYTDDSPGVKVGP 258
           G+G M +FYTDD+PG+K+ P
Sbjct: 33  GAGTMLQFYTDDAPGLKISP 52


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 314 SGGMWRFYTDDSPGVKVGP 258
           +G M +FYTDD+PG+K+ P
Sbjct: 37  AGSMLQFYTDDAPGLKISP 55


>At5g05870.1 68418.m00645 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 464

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 313 LEECGGSIPMILLESKWGQFCFSD-VSPVYCIGIHV 209
           LE     +PMI L  KW QF  +  +S V+ +GIH+
Sbjct: 362 LESICEGVPMICLPCKWDQFVNARFISEVWRVGIHL 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,884,014
Number of Sequences: 28952
Number of extensions: 221753
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)