Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.33 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    23   2.3  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    23   2.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   5.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   7.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 585 SDNRWQPSSACDNRRQRSSRCDIRWHRHQDMTAAGNRHQHG 463
           S+N W+ ++  DNR   SSR      R+   +  G   Q G
Sbjct: 384 SNNHWRKNNPNDNRNNTSSRAQGETSRNSKNSGNGGGVQDG 424


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 716 ILHKKKKVRNILFCLCDASVCRVDVAHRRRAVCHPKIT 829
           ILH K+   N L CL     C  + A  R  +    IT
Sbjct: 33  ILHNKRLFDNYLQCLLKKGKCNEEAAILRDVIPDALIT 70


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 716 ILHKKKKVRNILFCLCDASVCRVDVAHRRRAVCHPKIT 829
           ILH K+   N L CL     C  + A  R  +    IT
Sbjct: 33  ILHNKRLFDNYLQCLLKKGKCNEEAAILRDVIPDALIT 70


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 54  TSSQSGDCERV-GRFRRNHNII 116
           T+ +  +C++  GRFRR H+++
Sbjct: 242 TNEKPFECDKCRGRFRRRHHLV 263


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 589 SVRQPLATVISM*QPPATVIKM*HPLAPS 503
           S +Q +    S+ QP  TVI+   PLAP+
Sbjct: 25  SPQQSIIVSGSITQPTKTVIQSKRPLAPA 53


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 716 ILHKKKKVRNILFCLCDASVC 778
           ILH K+ + N + CL +   C
Sbjct: 46  ILHSKRLLLNYINCLLEKGPC 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,684
Number of Sequences: 336
Number of extensions: 4675
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)