Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   3.3  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   7.7  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   7.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.7  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 454 WQPSSAWDNRWQPS 413
           W PS+ +DNRW P+
Sbjct: 444 WLPSTKFDNRWSPT 457


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 118 CIVLNKYIFK*FVHKNFIMPYYFLRIKLLLV 210
           C+V  KY F+ F H + +  Y+FL + +LLV
Sbjct: 45  CVVDVKYYFEGFSH-SLLFVYFFLTLIILLV 74


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 527  DVTSAGTVIKI*QPLATVISMGQLLATVISM 435
            D+ S  +VIK  Q L++ + +G LL TVI +
Sbjct: 1431 DIVSLVSVIKCGQLLSSKLRLGPLLTTVIKL 1461



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 485  LATVISMGQLLATVISMGQPLATVINM 405
            L +VI  GQLL++ + +G  L TVI +
Sbjct: 1435 LVSVIKCGQLLSSKLRLGPLLTTVIKL 1461


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
 Frame = -3

Query: 763 TETKQYISYFLFFMKNPL---FYIYQ-SHLFT 680
           TET Q++ +F+F++ + +   F +YQ  HLFT
Sbjct: 180 TETYQWVGFFIFWLISNVAIWFPVYQIRHLFT 211


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 170 IKFLCTNYLKIYLFSTIHNNIVVSTEPSDAF 78
           ++++C  Y + Y  +++ NN+V+    S AF
Sbjct: 188 LQYICQTYERFYAVASVLNNMVMQLVDSFAF 218


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 758 LCDASVCRVDVAHRRRAVCHPKITFATE 841
           LCD    R  +   R+A CHP++ F  +
Sbjct: 561 LCDEESMRRWLVRLRQACCHPQVGFGNK 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,445
Number of Sequences: 5004
Number of extensions: 73495
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)