Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0502 + 9970516-9971028                                           36   0.041
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    32   0.50 
07_01_0802 - 6287180-6287605                                           31   0.87 
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    31   0.87 
10_07_0024 - 11964126-11964542,11965235-11966176,11966245-119662...    30   2.0  
08_01_0842 - 8252232-8253155                                           30   2.7  
09_01_0004 - 133130-133897                                             29   6.2  

>09_02_0502 + 9970516-9971028
          Length = 170

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 375 RPESGCQMLSHVDDGCQRLSHADDGCQQLSHADDGCQRLSYLDDGASG 518
           R E+G   + + DDG  R+ H DDG  ++   DDG   + + DD  +G
Sbjct: 22  RHENGGGRIRYCDDGGGRICHPDDGGDRIHRRDDGGGWIRHRDDVEAG 69



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 411 DDGCQRLSHADDGCQQLSHADDGCQRLSYLDDGASGCH 524
           DDG  R+   ++G  ++ + DDG  R+ + DDG    H
Sbjct: 14  DDGGGRIHRHENGGGRIRYCDDGGGRICHPDDGGDRIH 51


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -1

Query: 591 PLSDNRWQPSSACDNRRQRSSRCDIRWHRHQDMTAAGNRHQHGTTAGNRHQH---GTTAG 421
           PL D  W      D+ R R      R HRH       +RH+HG + G+ H H   G    
Sbjct: 511 PLYD--WWGLEPDDDYRARRRHQKGRHHRHHH----DHRHRHGHSHGDHHHHYHGGHHQR 564

Query: 420 NRHQHVTTFD 391
            RH H   +D
Sbjct: 565 RRHHHPPAWD 574


>07_01_0802 - 6287180-6287605
          Length = 141

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 444 DGCQQLSHADDGCQRLSYLDDGASGCHILMTVAGGCHMLMTVASGCR 584
           D C+QL+  DDG  R   LD   SG +  +      H +  V  GCR
Sbjct: 55  DCCRQLAAVDDGWCRCGALDHMLSGIYRELGATEAGHPMAEVFPGCR 101


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = -1

Query: 615 RFVDRTTLPLSDNRWQPSSACDNRRQRSSRCDIRWHRHQDMTAAGNRHQHGTTAGNRHQH 436
           R +D T L  S   W  S   D+ RQ+ S  +  W   + +T     H+ GT  GN    
Sbjct: 515 RLLDGTALD-SSTAWFCSMNPDSARQKCSIPEESWDLKRKITYLPGFHKKGTPPGNEQNA 573

Query: 435 GTTAGNRHQHVTTFDSRS 382
                   +H    DS +
Sbjct: 574 SFFTNILKEHAALIDSET 591


>10_07_0024 -
           11964126-11964542,11965235-11966176,11966245-11966291,
           11966545-11966602,11968378-11968624,11970207-11970390,
           11970410-11970548,11970689-11970796
          Length = 713

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 379 RRAAVKCCHMLMTVASGCPMLMTV 450
           R   V+ C ML T+ SG PML TV
Sbjct: 496 RSLRVRSCRMLRTIESGAPMLATV 519


>08_01_0842 - 8252232-8253155
          Length = 307

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 516 RWHRHQDMTAAGNRHQHGTTAGNRHQHG 433
           R H H    AAG+ H HG  AG+ H HG
Sbjct: 187 RKHPHPPCAAAGDGHGHG--AGHAHAHG 212


>09_01_0004 - 133130-133897
          Length = 255

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 621 DSRFVDRTTLPLS-DNRWQPSSACDNRRQRSS-RCDI 517
           D R VDR    ++   RWQP++A   R QR + RCD+
Sbjct: 15  DRRDVDRRGRTVTRKRRWQPAAAGRRRGQRGTRRCDV 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,027,125
Number of Sequences: 37544
Number of extensions: 472604
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)