Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    30   1.8  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    30   1.8  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    30   1.8  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     30   1.8  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016662-1|AAY55863.1|  196|Caenorhabditis elegans Hypothetical ...    29   4.2  
U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   7.3  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical
           protein F48C1.8 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -1

Query: 510 HRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNRHQHVTTFDSRS 382
           H H      G  H HG   G  H HG   G  H H +++   S
Sbjct: 186 HHHGGGGGGGGHHHHG---GGGHYHGGGGGFHHHHHSSYSGSS 225


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 322  LQLSRR*EVGDVTSTHGHGRRAAVKCCHMLMTVASGCPMLMTVASSCPMLMTVASGCHI 498
            L +S R  +  V  TH HG       C      +SGC    T+AS     M  A    +
Sbjct: 1336 LTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFV 1394


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 322  LQLSRR*EVGDVTSTHGHGRRAAVKCCHMLMTVASGCPMLMTVASSCPMLMTVASGCHI 498
            L +S R  +  V  TH HG       C      +SGC    T+AS     M  A    +
Sbjct: 1336 LTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFV 1394


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 322  LQLSRR*EVGDVTSTHGHGRRAAVKCCHMLMTVASGCPMLMTVASSCPMLMTVASGCHI 498
            L +S R  +  V  TH HG       C      +SGC    T+AS     M  A    +
Sbjct: 1213 LTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFV 1271


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 322  LQLSRR*EVGDVTSTHGHGRRAAVKCCHMLMTVASGCPMLMTVASSCPMLMTVASGCHI 498
            L +S R  +  V  TH HG       C      +SGC    T+AS     M  A    +
Sbjct: 1336 LTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFV 1394


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 322  LQLSRR*EVGDVTSTHGHGRRAAVKCCHMLMTVASGCPMLMTVASSCPMLMTVASGCHI 498
            L +S R  +  V  TH HG       C      +SGC    T+AS     M  A    +
Sbjct: 1336 LTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFV 1394


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 512 QRMSHLDDRCRRLSHADDGCQRLSDRGSVVLSTNLESLLITAIYTYINFYTLIT 673
           QR+ ++ D C + +H   GC  LSD  + +        L   +Y  +NF   +T
Sbjct: 186 QRVQYIPDSCCKSTHQRKGC-ALSDSPNNIFYRGCLPFLKEEVYNNLNFLFTVT 238


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 370 GHGRRAAVKCCHMLMTVAS-GCPMLMTVASSCPMLMTVASGC 492
           GH   A   CC      +S GC  + T+  SCP  MT  + C
Sbjct: 220 GHFCTAQKVCCPSTALQSSIGCSTVCTIDESCPKGMTCQNNC 261


>AF016662-1|AAY55863.1|  196|Caenorhabditis elegans Hypothetical
           protein C33C12.11 protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 378 PESGCQMLSHVDDG-----CQRLSHADDGCQQLSHADDG 479
           P +GC  L+H DDG      +    +++ C  L+H DDG
Sbjct: 111 PSAGCCFLAHDDDGSLAGQLRDFFSSENRCPLLAHRDDG 149


>U00035-2|AAA50644.2|  413|Caenorhabditis elegans Hypothetical
           protein R01H2.2 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 29  QHRRRPLEDFVSKW*LRTRRKVPSKP 106
           +HR  P+EDF S+W +RT ++   +P
Sbjct: 222 KHRNDPIEDFYSEW-IRTLKQGSDRP 246


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = -1

Query: 594 LPLSDNRWQPSSACDNRRQRSSRCDIRWHRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNR 415
           LP     + P  A   ++   S  +   H H D    G+ H H    G+ H H    G+ 
Sbjct: 275 LPQPPTSYAPPVAATQQQPPVSESNGHGHSHAD---GGHGHSHDD-GGHGHSHDGGHGHS 330

Query: 414 HQH 406
           H+H
Sbjct: 331 HEH 333


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -1

Query: 510  HRHQDMTAAGNRHQHGTTAGN--RHQHGTTAGNRHQH 406
            H HQD     N HQH T       H H T+  N H H
Sbjct: 963  HYHQDE----NAHQHSTAENEHIHHYHTTSNENAHHH 995


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 570 QPSSACDNRRQRSSRCDIRWH--RHQDMTAA-GNRHQHGTTAGNRHQHGTTAGNRHQHVT 400
           Q S   ++R +  S    R H  RH   + + G RH HG   G+  + G + G RH H  
Sbjct: 218 QKSEGVEHRGRSGSPGGRRGHGGRHGSRSGSPGGRHGHGGHGGHGSRSG-SPGGRHGHGG 276

Query: 399 TFDSRSPAVPVCGRH 355
           +   R       GRH
Sbjct: 277 SGHHRGGRHGGHGRH 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,656
Number of Sequences: 27780
Number of extensions: 425608
Number of successful extensions: 1228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)