Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 428 PLATVINM*QHLTAALRPCPCVDVTSPTSYRRDN 327
           P+AT     Q     LRP    D TSP  YR  N
Sbjct: 397 PMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYN 430


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 516 RWHRHQDMTAAGNRHQHGTTAGNRHQ 439
           RW ++QD   +G R     TA   H+
Sbjct: 45  RWKQYQDTLYSGTRSSESLTAQAHHR 70


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -1

Query: 510 HRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNR 415
           +R  D    GNR       GNR       GNR
Sbjct: 463 NRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNR 494


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 836 LQM*FSDGRQPDDDERHPRDILTHHRDKTI 747
           L++ F   R P    + PRD    HR K++
Sbjct: 48  LKLAFEPRRNPGPGSKGPRDFPRSHRFKSL 77


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 691 HLFTH*GNKRIKVDVCIYS 635
           HL  H G+K  K + C YS
Sbjct: 7   HLRNHFGSKPFKCEKCSYS 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,804
Number of Sequences: 438
Number of extensions: 5293
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)