Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30463
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24480.1 68417.m03509 serine/threonine protein kinase, putati...    29   5.1  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    28   6.8  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    28   6.8  
At2g03230.1 68415.m00276 hypothetical protein                          28   6.8  
At5g06780.1 68418.m00766 emsy N terminus domain-containing prote...    28   9.0  

>At4g24480.1 68417.m03509 serine/threonine protein kinase, putative
           similar to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 963

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 515 RMSHLDDRCRRLSHADDGCQRLSDRGSVVLSTNLE 619
           +MSHL D  R   H+   CQ +  + S  LS N++
Sbjct: 506 QMSHLTDFSRPCVHSTSPCQTVESKTSRTLSENIQ 540


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 511 APSSRYDSRWQPSSAWDNCWQPSSAWDNRWQPSSTCDNI*QPLSGRARVWTSRHQPLTD 335
           A   R+   W+      +   P   WD ++    T D +     G  RVWT RH  + D
Sbjct: 247 ASEDRHAKIWKDGVCVQSLEHPGCIWDAKFL--ETGDIVTACSDGVVRVWTVRHDAIAD 303


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 511 APSSRYDSRWQPSSAWDNCWQPSSAWDNRWQPSSTCDNI*QPLSGRARVWTSRHQPLTD 335
           A   R+   W+      +   P   WD ++    T D +     G  RVWT RH  + D
Sbjct: 247 ASEDRHAKIWKDGVCVQSLEHPGCIWDAKFL--ETGDIVTACSDGVVRVWTVRHDAIAD 303


>At2g03230.1 68415.m00276 hypothetical protein
          Length = 152

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 563 DGCQRLSDRGSVVLSTNLESLLITAIYTYINFYTLITLMCK*MRLINIK 709
           D C+ + D G+      L+  LIT +YT +++Y     M K MR  ++K
Sbjct: 82  DHCREVKDDGTNCRDARLK--LITCMYTNVDYYGPFLAMQKEMRTQSLK 128


>At5g06780.1 68418.m00766 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 320

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 522 DIRWHRHQDMTAAGNRHQHGTTAGNRH--QHG 433
           DIRW   +D       H  GTT GNR    HG
Sbjct: 190 DIRWDGEEDGVTLNVGHGGGTTRGNRRTLSHG 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,770,659
Number of Sequences: 28952
Number of extensions: 374556
Number of successful extensions: 1024
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)