Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30462
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 138 2e-34
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 133 1e-32
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 31 0.086
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.35
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 29 0.35
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 0.60
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 4.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.3
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 5.6
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 24 7.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 7.4
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 24 9.8
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.8
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 138 bits (335), Expect = 2e-34
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3
Query: 3 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE+AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRK 272
+ +PKLY KL YCVSCAIHS+VV R+
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVRSRE 90
Score = 25.4 bits (53), Expect = 3.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 254 RNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 343
R RS++ RRIRT PP+ + RD + P AV +
Sbjct: 85 RVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 133 bits (321), Expect = 1e-32
Identities = 58/90 (64%), Positives = 74/90 (82%)
Frame = +3
Query: 3 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE+AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRK 272
+ +PK+Y KL YCVSCAIH++VV R+
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVRSRE 90
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 254 RNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 343
R RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 85 RVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 30.7 bits (66), Expect = 0.086
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = +3
Query: 96 KDKAIKKFVIRNIVESAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVGTDR--R 269
+DK K + R + + N ++Y +F++PK + +HS VV +R
Sbjct: 60 EDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDE 119
Query: 270 KTEESVLLPRVTSLGTCHV----HRQCKGSDLLLNK 365
T + V ++ CH+ HR K ++LLNK
Sbjct: 120 CTTRKIFRQIVHAIDYCHLHRVAHRDLKLENILLNK 155
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.35
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 84 RCVPKDKAIKKFVIRNIVESAAVRDI 161
RCVPKDKAI + +NI + VRD+
Sbjct: 20 RCVPKDKAILNPLAKNIAD--VVRDL 43
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 28.7 bits (61), Expect = 0.35
Identities = 13/63 (20%), Positives = 31/63 (49%)
Frame = +3
Query: 123 IRNIVESAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLPRV 302
+ N ++ + D N+ +Y +L K+Y + SC +H+ ++G + + + + P
Sbjct: 34 LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPIT 92
Query: 303 TSL 311
+L
Sbjct: 93 RTL 95
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 0.60
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 143 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 24
+ +DV + +L + + L P+A+C +S ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 310 REVTLGRSTDSSVFLRSVPTTLLWMAH 230
R TL T VFLR V LLW H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 135 VESAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVL 290
+E A++ +++ +Q +L+ +L CV +H+K+ TD + E +L
Sbjct: 3042 IEDMALKLLSEKYDNEAYQA-ELFYRLSNCVEKVLHNKISITDLKTEYEEIL 3092
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 249 VVGTDRRKTEESVLLPRVTSLGT 317
+ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 230 MRHPQQSCRNRSKKDRRIRTPPKSNFPRDMSR 325
MR+ + + IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 78 CARCVPKDKAIKKFVIRNIVESAAVRDINDAS 173
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 149 RRRFYDVPNHELFDSLVLWHAPRA 78
R F +V N L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 283 DSSVFLRSVPTTLLWMAHDTQ*WSLAYNLGSWNIGYTEASLIS 155
DS++FL ++P++ W+ W W IG A+L+S
Sbjct: 192 DSAIFLEALPSSHQWLLTVMSFW--------WAIGQVIANLVS 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,894
Number of Sequences: 5004
Number of extensions: 27784
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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