Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30462
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   138   1e-33
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           29   1.8  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   4.1  
01_06_1377 + 36764461-36765339                                         27   4.1  
08_02_0252 + 14868530-14868757                                         27   7.2  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.2  
04_01_0268 - 3585907-3588086,3590167-3590326                           27   7.2  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     26   9.6  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    26   9.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  138 bits (334), Expect = 1e-33
 Identities = 59/90 (65%), Positives = 74/90 (82%)
 Frame = +3

Query: 3   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRK 272
            + LPKLYAK+H+CVSCAIH+ +V    R+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRE 90


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 212 APLLRVMRHPQQSCRNRSKKDRRIRTPPK 298
           +PL R++R     C   +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 170 GIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 18
           GI  + D   +YD  +  LF+ L+    P A  +SH+F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 179 PNVPAP*VIR*APLLRVMRHPQQSCRNRSKKDRRIRTPPKSNFPRDMSRP 328
           P+ PA  +I   PLLR    PQ   R R     R   PP+  +P   S P
Sbjct: 121 PDSPASALIT-LPLLRPSGRPQGKLRIRLALRERSPPPPEPQYPPPSSSP 169


>08_02_0252 + 14868530-14868757
          Length = 75

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 215 PLLRVMRHPQQSCRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 343
           P+LR     Q  CR R   DR    PP+    ++ +RPQ + R
Sbjct: 19  PMLRRQHSAQNECR-REGVDRLEHKPPECVKGKENARPQRLLR 60


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 152 DRRRFYDVPNHELFD 108
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 259 VPTTLLWMAHDTQ*WSLAYNLGSWNIGYT 173
           V   +LW+A+    W+  Y LGS ++G T
Sbjct: 96  VRALVLWLAYQLGGWAGTYALGSMSLGRT 124


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 6   TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAI 110
           T  RR    A  G G   AV C +CA   P + A+
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAV 112


>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 SAAVRDINDASVYPMFQLPKLYAKLHYCVS 230
           SAA RD+ +  V+PM  L  LY +L   VS
Sbjct: 40  SAAERDLLNFMVFPMLLLRLLYGQLWITVS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,171
Number of Sequences: 37544
Number of extensions: 218182
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)