Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30462
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             162   1e-40
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         28   2.4  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   3.2  
SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)                     26   9.6  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  162 bits (393), Expect = 1e-40
 Identities = 75/98 (76%), Positives = 84/98 (85%)
 Frame = +3

Query: 3   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVE+AAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLP 296
           ++ LPKLY KLHYCVSCAIHSKVV  +R K +  +  P
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVV-RNRSKEDRKIRTP 97



 Score = 31.1 bits (67), Expect = 0.34
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +2

Query: 254 RNRSKKDRRIRTPP 295
           RNRSK+DR+IRTPP
Sbjct: 85  RNRSKEDRKIRTPP 98


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -3

Query: 185 HWVYRGIVN------ISDRRRFYDVPNHELFDSLVLWH-APRAVCASHS 60
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+  S
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCSIQS 488


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 3    MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
            M  ++ N    K+ R     +  TNC      +K   K   +NI+ + +  D  D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


>SB_11344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 129 NIVESAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLPRVTS 308
           NIV S AV  +   +V P+    +L A++    +   + KV+  +  K  E    P+   
Sbjct: 115 NIVSSVAVTSVQQQAVTPLAPQTQLTARVSDNKTRMENCKVISKENAKPNEK-CYPKPLF 173

Query: 309 LGTCHVHRQCKGSD 350
             +C +    K SD
Sbjct: 174 SYSCLIAMALKNSD 187


>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
          Length = 234

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 224 RVMRHPQQSCRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 343
           ++ R PQ S  ++  +  RI  PP+ + P  +S+P  + R
Sbjct: 182 QISRSPQISESSQISQPPRISQPPQISQPPQISQPPQISR 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,666
Number of Sequences: 59808
Number of extensions: 233398
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)