Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30462
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 142 8e-35
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 140 3e-34
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 140 3e-34
At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein con... 28 2.6
At2g25630.1 68415.m03072 glycosyl hydrolase family 1 protein con... 28 2.6
At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein con... 27 3.4
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 4.5
At3g45800.1 68416.m04957 hypothetical protein 26 7.9
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 26 7.9
At2g11620.1 68415.m01249 hypothetical protein 26 7.9
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 142 bits (344), Expect = 8e-35
Identities = 64/98 (65%), Positives = 75/98 (76%)
Frame = +3
Query: 3 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLP 296
+ LPKLYAK YCVSCAIHS VV R +T V P
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 140 bits (339), Expect = 3e-34
Identities = 63/98 (64%), Positives = 74/98 (75%)
Frame = +3
Query: 3 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLP 296
+ LPKLYAK YCVSCAIHS VV R +T V P
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 140 bits (339), Expect = 3e-34
Identities = 63/98 (64%), Positives = 74/98 (75%)
Frame = +3
Query: 3 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYP 182
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 183 MFQLPKLYAKLHYCVSCAIHSKVVGTDRRKTEESVLLP 296
+ LPKLYAK YCVSCAIHS VV R +T V P
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRV-RSRTNRRVRTP 97
>At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Non-cyanogenic beta-glucosidase precursor
(SP:P26204) [Trifolium repens]
Length = 507
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 211 LAYNLGSWNIGYTEASLISLTAADSTMFLITNFLIALSFGTHRAQFVH 68
+A N G WN+ YTE++ L AA + F F+ L G + V+
Sbjct: 268 IALNAG-WNLPYTESAEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 314
>At2g25630.1 68415.m03072 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 489
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 211 LAYNLGSWNIGYTEASLISLTAADSTMFLITNFLIALSFGTHRAQFVH 68
+A N G WN+ YTE++ L AA + F F+ L G + V+
Sbjct: 267 IALNAG-WNLPYTESAEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 313
>At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 506
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 211 LAYNLGSWNIGYTEASLISLTAADSTMFLITNFLIALSFGTHRAQFVH 68
+A N G WN+ YTE+ L AA + F F+ L G + V+
Sbjct: 268 IALNAG-WNLPYTESPKDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 314
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 60 AVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASVYPMFQLPKL 203
++ C C VP+ +K + AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613
>At3g45800.1 68416.m04957 hypothetical protein
Length = 563
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 235 PSTAKLSEQIEERQKNPYSSQE 300
PSTAKL Q++ Q++PY +
Sbjct: 398 PSTAKLLTQLDHLQQDPYGQYQ 419
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 30 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVESAAVRDINDASV 176
+ K ++KAV AR P+DK + K V +V+ AA + +++A +
Sbjct: 361 KEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAA-KKVSEAEI 408
>At2g11620.1 68415.m01249 hypothetical protein
Length = 491
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 235 PSTAKLSEQIEERQKNPYSSQE 300
PSTAKL Q++ Q++PY +
Sbjct: 208 PSTAKLLTQLDHLQQDPYGQYQ 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,151,343
Number of Sequences: 28952
Number of extensions: 158843
Number of successful extensions: 438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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