Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30461X
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 66 2e-12
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 39 6e-04
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 35 0.009
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 2.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 4.2
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 5.5
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 5.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.3
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.6
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 9.6
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 9.6
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.6
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 66.5 bits (155), Expect = 2e-12
Identities = 27/68 (39%), Positives = 34/68 (50%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 445
GH AR+C + CY CN TGH A E + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 446 CYNCNKSG 469
CY C + G
Sbjct: 85 CYKCGRVG 92
Score = 64.1 bits (149), Expect = 1e-11
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Frame = +2
Query: 257 NRTGHFARDCKE--EADRCYRCNGTGHIAREFAQSPDE---PSCYNCNKTGHIARNCPEG 421
N+TGH A +C E + CY C GH+ R+ SP+ CY C + GHIAR+C
Sbjct: 42 NQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTN 101
Query: 422 GRES--------ATQTCYNCNKSGTSPATVPTAQDVLVCGKPG 526
G++S + CY C G CGK G
Sbjct: 102 GQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIG 144
Score = 54.8 bits (126), Expect = 8e-09
Identities = 26/56 (46%), Positives = 31/56 (55%)
Frame = +2
Query: 302 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 469
RCY C GH ARE + CYNCN+TGH A C E +E +TCY C +G
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAG 67
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/49 (48%), Positives = 28/49 (57%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 412
GH ARDC +CY C GH + E Q+ D CY CN+ GHIA NC
Sbjct: 125 GHQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 48.8 bits (111), Expect = 5e-07
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Frame = +2
Query: 266 GHFARDCKEEAD-----RCYRCNGTGHIARE-----------FAQSPDEPSCYNCNKTGH 397
GH RDC + CY+C GHIAR+ F +CY C GH
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Query: 398 IARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGK 520
AR+C G + CY+C K G A D +C K
Sbjct: 127 QARDCTMGVK------CYSCGKIGHRSFECQQASDGQLCYK 161
Score = 48.8 bits (111), Expect = 5e-07
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Frame = +2
Query: 242 EVLQGNRTGHFARDCKEEADR-------------CYRCNGTGHIAREFAQSPDEPSCYNC 382
E + R GH ARDC+ + CY C GH AR+ CY+C
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSC 140
Query: 383 NKTGHIARNCPEGGRESATQTCYNCNKSG 469
K GH + C + S Q CY CN+ G
Sbjct: 141 GKIGHRSFECQQA---SDGQLCYKCNQPG 166
Score = 46.0 bits (104), Expect = 4e-06
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 365 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPGTS 532
P CYNC + GH AR C +G CYNCN++G + Q C GT+
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYACGTA 66
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 120 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCF 251
S P + CYKC R GH AR+C G S G +R C+
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119
Score = 35.9 bits (79), Expect = 0.004
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQ 197
S+CY CN+TGH A ECT+
Sbjct: 36 SICYNCNQTGHKASECTE 53
Score = 35.1 bits (77), Expect = 0.007
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKATAQDT 272
CY C GH ARECT+G + + + +C + + T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.063
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 132 AMSSSVCYKCNRTGHFARECT 194
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 29.9 bits (64), Expect = 0.26
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECTQG 200
S+ CY C GH AR+CT G
Sbjct: 114 SNMNCYACGSYGHQARDCTMG 134
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 108 AQEFSKPIAMSSSVCYKCNRTGHFAREC 191
A E ++P CY C GH R+C
Sbjct: 48 ASECTEP--QQEKTCYACGTAGHLVRDC 73
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQ 197
CY C + GH + EC Q
Sbjct: 137 CYSCGKIGHRSFECQQ 152
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTG-HIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 442
GH ++DC C C HI+ + P C NC GHIA C E R+ +
Sbjct: 96 GHISKDCPHVL--CTTCGAIDDHIS---VRCPWTKKCMNCGLLGHIAARCSE-PRKRGPR 149
Query: 443 TCYNCNKSGTSPATVP 490
C C+ + +T P
Sbjct: 150 VCRTCHTDTHTSSTCP 165
Score = 31.9 bits (69), Expect = 0.063
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 338 REFAQSPDEPS-CYNCNKTGHIARNCP 415
R F P E C+NC GHI+++CP
Sbjct: 77 RYFGSDPSESIVCHNCKGNGHISKDCP 103
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 141 SSVCYKCNRTGHFAREC 191
S VC+ C GH +++C
Sbjct: 86 SIVCHNCKGNGHISKDC 102
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 34.7 bits (76), Expect = 0.009
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 266 GHFARDCKEEADR---CYRCNGTGHIAREFA-QSPDE-PSCYNCNKTGHIARNCPE 418
GH +DC E D C+RC H + + P + C+ C++ GH++ C +
Sbjct: 86 GHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 338 REFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 457
R Q + C+ C + GHI ++CPE + C+ C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRC 105
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 302 RCYRCNGTGHIAREFAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 439
+C+ C+ GH++ + Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNCP 415
+E C C GH + + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.26
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 469
C NC GH +CPE + C +C G
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIG 343
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = +2
Query: 254 GNRTGHFARDCKEEADR-----CYRCNGTGHIAREFAQSPDEP 367
GN GH DC E + C C GHIAR+ +P
Sbjct: 315 GN-VGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 147 VCYKCNRTGHFAREC 191
VC C GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 144 SVCYKCNRTGHFAREC 191
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 144 SVCYKCNRTGHFAREC 191
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +2
Query: 407 NCPEGGRESATQTCYN----CNKSGTSPATVPTAQ-DVLVC 514
+CP+G E T C+N C +G + +P+ + D VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -3
Query: 455 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 291
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 290 P 288
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 332 IAREFAQSPDEPS--CYNCNKTGHIARNCP 415
IA P P CY C + GH + CP
Sbjct: 170 IAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 5.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 147 VCYKCNRTGHFAREC 191
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 350 QSPDEPSCYNCNKTGHIARN--CPEGGR 427
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 419 GGRESATQTCYNCNKSG 469
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 455 SYSRSASQTPAPPRDSSVRCGPSCCSCN 372
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 359 PGSVRTRALCAPCRYICSNGQPLPCNPSQSVLCGCLEALLTLPIET 222
P S R + L AP +C NG P N + ++ L ALL L I T
Sbjct: 556 PNSSRLQKLRAPG--LCPNGSPNYRNRYKLIVFNLLIALLILSILT 599
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 444 VCVADSRPPSGQFRAMWP 391
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 89 LH*CLKCSRIFKTDRN 136
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 406 ELSRGGAGVCDADLL*LQQVRHISRNCPDGTRRASV 513
E G +CDA LL + ++R PDG ++V
Sbjct: 195 EFPNSGEVICDAPLLTVAPTLGLNRIHPDGKEASTV 230
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 9.6
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = -3
Query: 446 RSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCAPCRYICSNGQPLPCNPSQSV 267
++ S AP +V+ G + + R RT+ C CR + + C+ + +
Sbjct: 8 KTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTKTGCLTCR-----KRRIKCDERKPI 62
Query: 266 LCGCLEALLTLPIETGIPRHHAPLRAFAREMP 171
C+++ T PR A +R +P
Sbjct: 63 CYNCIKSKRQCEGYTHFPRPSGTFTA-SRRIP 93
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 189 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 49
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,025
Number of Sequences: 5004
Number of extensions: 41448
Number of successful extensions: 163
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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