Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30461X
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.29 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   3.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.5  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   3.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 365 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 463
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 442 LRRRLPPPLGTVPCD 398
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 EFSKPIAMSSSVCYKCNRTGHFAR 185
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 442 LRRRLPPPLGTVPCD 398
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 311 CSNGQPLPCNPSQSVLCGCLEAL 243
           C++ +   C+ S S   GC+EAL
Sbjct: 164 CNSPENNTCSISNSYTNGCVEAL 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,015
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)