Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30461X
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 62 3e-10
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 58 3e-09
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 54 6e-08
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 49 2e-06
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 48 5e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 46 2e-05
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 46 2e-05
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 45 3e-05
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 45 3e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 45 3e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 2e-04
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 42 4e-04
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 40 0.001
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 39 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.003
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.003
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.004
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 37 0.010
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 36 0.013
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.023
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.054
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 34 0.071
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.16
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.38
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.38
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.38
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.38
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.38
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.66
At5g47430.1 68418.m05844 expressed protein 30 0.88
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.88
At4g17410.1 68417.m02607 expressed protein 30 0.88
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 30 1.2
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 29 1.5
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 29 1.5
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 1.5
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 29 2.0
At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A... 29 2.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.0
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 2.0
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 2.0
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /... 29 2.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 2.7
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 2.7
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 2.7
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 29 2.7
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 28 3.5
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 28 3.5
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 3.5
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 4.7
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 4.7
At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A... 28 4.7
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 28 4.7
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 4.7
At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ... 28 4.7
At5g61670.2 68418.m07738 expressed protein 27 6.2
At5g61670.1 68418.m07737 expressed protein 27 6.2
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 6.2
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 27 6.2
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 8.2
At5g21140.1 68418.m02524 expressed protein 27 8.2
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 27 8.2
At3g31950.1 68416.m04046 hypothetical protein 27 8.2
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 8.2
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 27 8.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 61.7 bits (143), Expect = 3e-10
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 16/84 (19%)
Frame = +2
Query: 266 GHFARDCKEE------------ADRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIA 403
GHFARDC ++ + CY C G GHIAR+ A + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 404 RNCPEGGRESA--TQTCYNCNKSG 469
R+C + G CY C K G
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEG 289
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Frame = +2
Query: 266 GHFARDC--KEEADR-CYRCNGTGHIAREFAQ-----SPDEPSCYNCNKTGHIARNC 412
GH ARDC K + R CY+C G+GH+AR+ Q ++ +CY C K GH AR C
Sbjct: 239 GHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 46.0 bits (104), Expect = 2e-05
Identities = 38/122 (31%), Positives = 44/122 (36%), Gaps = 31/122 (25%)
Frame = +2
Query: 197 GGRGVAGFRFQSAT*EVLQGNRTGHFARDC------------KEEADRCYRCNGTGHIAR 340
GG G G R TGHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 341 EFAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 463
+ Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 464 SG 469
G
Sbjct: 238 VG 239
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Frame = +2
Query: 305 CYRCNGTGHIAREFA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 442
CY C GHI+++ +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 443 ---TCYNCNKSG 469
CY C G
Sbjct: 162 GNDGCYTCGDVG 173
Score = 35.9 bits (79), Expect = 0.018
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
CY C TGHFAR+CT G
Sbjct: 134 CYNCGDTGHFARDCTSAG 151
Score = 35.1 bits (77), Expect = 0.031
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECT 194
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQ 197
CY C GHFAR+CTQ
Sbjct: 200 CYTCGDVGHFARDCTQ 215
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRD 218
CY C GH AR+CTQ V + D
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGD 188
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 254
CY+C +GH AR+C Q G S G + KC K
Sbjct: 255 CYQCGGSGHLARDCDQRG--SGGGGNDNACYKCGK 287
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCF 251
S CY C GH +++C GG +R E C+
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCY 135
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 141 SSVCYKCNRTGHFAREC 191
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/70 (42%), Positives = 36/70 (51%)
Frame = +2
Query: 260 RTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESAT 439
R GHFARDC C C GHIA A+ E C+NC + GH+A NC G
Sbjct: 62 RPGHFARDCSN-VSVCNNCGLPGHIA---AECTAESRCWNCREPGHVASNCSNEG----- 112
Query: 440 QTCYNCNKSG 469
C++C KSG
Sbjct: 113 -ICHSCGKSG 121
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQ 442
GH A +C E+ RC+ C GH+A + +E C++C K+GH AR+C R +
Sbjct: 83 GHIAAECTAES-RCWNCREPGHVA---SNCSNEGICHSCGKSGHRARDCSNSDSRAGDLR 138
Query: 443 TCYNCNKSG 469
C NC K G
Sbjct: 139 LCNNCFKQG 147
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 260 RTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEG 421
+ GH A DC + C C +GHIAR+ ++P C C+ +GH+AR+CP+G
Sbjct: 145 KQGHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 44.0 bits (99), Expect = 7e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +2
Query: 260 RTGHFARDCKEEADR------CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 412
++GH ARDC R C C GH+A A ++ +C NC +GHIAR+C
Sbjct: 119 KSGHRARDCSNSDSRAGDLRLCNNCFKQGHLA---ADCTNDKACKNCRTSGHIARDC 172
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPG 526
C NC + GH AR+C S C NC G A C +PG
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESRCWNCREPG 102
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQGGV 206
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 254
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECT 194
SVC C GH A ECT
Sbjct: 74 SVCNNCGLPGHIAAECT 90
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 147 VCYKCNRTGHFARECTQGGVVSRDSGFNR 233
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 54.0 bits (124), Expect = 6e-08
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Frame = +2
Query: 266 GHFARDCKEEA--------DRCYRCNGTGHIAREFAQSPDEP------SCYNCNKTGHIA 403
GHFARDC++ CY C G GHIA+ +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 404 RNCPEGGRESA-----TQTCYNCNKSG 469
R+C G S+ + C+ C K G
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEG 291
Score = 47.2 bits (107), Expect = 7e-06
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Frame = +2
Query: 299 DRCYRCNGTGHIAREFAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 448
D CY C G GH AR+ Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 449 YNCNKSG 469
Y C +G
Sbjct: 255 YECGGTG 261
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 29/121 (23%)
Frame = +2
Query: 194 AGGR--GVAGFRFQSAT*EVLQGNRTGHFARDCKEEAD-----------RCYRCNGTGHI 334
+GG+ G G R E GHFARDC++ CY C GH+
Sbjct: 113 SGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 172
Query: 335 AREF-------------AQSPDEPSCYNCNKTGHIARNCPEGGRES---ATQTCYNCNKS 466
A++ + CY C GH AR+C + G + TCY C
Sbjct: 173 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGV 232
Query: 467 G 469
G
Sbjct: 233 G 233
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQSPDEPS--------CYNCNKTGHIARNC 412
CY C GTGH+AR+ + S C+ C K GH AR C
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 37.1 bits (82), Expect = 0.008
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPE------GGR 427
GH A+DC + G G +S E CY C GH AR+C + GG
Sbjct: 103 GHMAKDCDGGSGGKSFGGGGGR------RSGGEGECYMCGDVGHFARDCRQSGGGNSGGG 156
Query: 428 ESATQTCYNCNKSG 469
+ CY+C + G
Sbjct: 157 GGGGRPCYSCGEVG 170
Score = 35.5 bits (78), Expect = 0.023
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCF 251
CY+C TGH AR+C + G S SG KCF
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCF 285
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
CY C GHFAR+C Q G
Sbjct: 132 CYMCGDVGHFARDCRQSG 149
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.22
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECT 194
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.5 bits (63), Expect = 1.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 368 SCYNCNKTGHIARNCPEG 421
+C+NC + GH+A++C G
Sbjct: 95 NCFNCGEVGHMAKDCDGG 112
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSG 224
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Frame = +2
Query: 263 TGHFARDCKEE----------ADRCYRCNGTGHIARE 343
TGH ARDC +++C+ C GH ARE
Sbjct: 260 TGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARE 296
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKC 248
S CY C GH A+ CT + S G R +C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGRACYEC 257
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 254 GNRTGHFAR-DCKEEADRCYRCNGTGHIAR---EFAQSPDEPSCYNCNKTGHIARNCPEG 421
G+ T H R + + C+ C+ HIA+ E ++ C C + GH +NCPE
Sbjct: 58 GSSTRHPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 422 GRESATQT-CYNCNKSGTSPATVP 490
ES+ + CYNC +G S + P
Sbjct: 118 NNESSEKKLCYNCGDTGHSLSHCP 141
Score = 44.4 bits (100), Expect = 5e-05
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +2
Query: 248 LQGNRTGHFARDCKE------EADRCYRCNGTGHIAREFAQSPDE-----PSCYNCNKTG 394
LQ R GH ++C E E CY C TGH ++ SC+ C G
Sbjct: 102 LQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQG 161
Query: 395 HIARNCPE 418
HI++NCPE
Sbjct: 162 HISKNCPE 169
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = +2
Query: 269 HFARDCKEEADR-----CYRCNGTGHIAREFAQSPDEPS----CYNCNKTGHIARNCPEG 421
H A+ C E+++ C +C GH + + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 422 GRESATQ--TCYNCNKSG 469
+ T+ +C+ C G
Sbjct: 144 MEDGGTKFASCFICKGQG 161
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +2
Query: 293 EADRCYRCNGTGHIAREFAQSPD---------EPSCYNCNKTGHIARNCPEGGRES 433
EA CYRC GH ARE S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +2
Query: 353 SPDEPSCYNCNKTGHIARNCPEG-------GRESATQTCYNCNKSGTSPATVPTAQDV 505
S + CY C + GH AR CP GRES T CY CN SG P + V
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSSQV 377
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 266 GHFARDCKEEADR---CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 433
GH + +C R C+ C H A++ ++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 434 ATQTCYNCNKSG 469
C C G
Sbjct: 232 KGAVCLRCGDFG 243
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Frame = +2
Query: 260 RTGHFARDCKEEADR------CYRCNGTGH--IAREFAQSPD---EPSCYNCNKTGHIAR 406
+TGH A+DC ++ C RC GH I ++ S + + CY C GH+
Sbjct: 215 KTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLC- 273
Query: 407 NCPEGGRE-SATQTCYNCNKSGTS 475
C E G S +CY C + G S
Sbjct: 274 -CVEPGNSLSWAVSCYRCGQLGHS 296
Score = 39.5 bits (88), Expect = 0.001
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECTQGGVVSR 215
S ++CY+CN +GHFAREC VS+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSK 379
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 11/41 (26%)
Frame = +2
Query: 266 GHFARDC-----------KEEADRCYRCNGTGHIAREFAQS 355
GHFAR+C +E CYRCNG+GH ARE S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 36.7 bits (81), Expect = 0.010
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQ 236
+S CY+C GHFAREC +S G Q
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Score = 34.7 bits (76), Expect = 0.041
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 368 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPG 526
SCY+C + GH + NCP + + C+ C D +C K G
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKGHDCYICKKTG 217
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +3
Query: 3 DGGWLPCYRSVINYNLFVNS*DN*SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFA 182
D GW+ CY + N + + + + E CY C +TGH A
Sbjct: 162 DAGWVSCYSCGEQGHTSFNC-PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220
Query: 183 REC 191
++C
Sbjct: 221 KDC 223
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +2
Query: 302 RCYRCNGTGHIAR-EFAQSPD-EPSCYNCNKTGHIARNCPEGGRES 433
+CY C GH+ E S SCY C + GH C ES
Sbjct: 262 QCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEES 307
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 164 PDRAFRARMHAGGRGVAGFRFQ-SAT*EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAR 340
P A AR + GR G R A+ +G+R +R + RC+ C GH AR
Sbjct: 54 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNG-SRGPPPGSGRCFNCGVDGHWAR 112
Query: 341 EFAQSPDEPSCYNCNKTGHIARNC 412
+ + CY C + GHI RNC
Sbjct: 113 DCTAGDWKNKCYRCGERGHIERNC 136
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 266 GHFARDCK--EEADRCYRCNGTGHIAREFAQSP 358
GH+ARDC + ++CYRC GHI R SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 356 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 469
P C+NC GH AR+C G ++ CY C + G
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERG 130
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECTQG 200
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 164 PDRAFRARMHAGGRGVAGFRFQ-SAT*EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAR 340
P A AR + GR G R A+ +G+R +R + RC+ C GH AR
Sbjct: 13 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNG-SRGPPPGSGRCFNCGVDGHWAR 71
Query: 341 EFAQSPDEPSCYNCNKTGHIARNC 412
+ + CY C + GHI RNC
Sbjct: 72 DCTAGDWKNKCYRCGERGHIERNC 95
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 266 GHFARDCK--EEADRCYRCNGTGHIAREFAQSP 358
GH+ARDC + ++CYRC GHI R SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 356 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 469
P C+NC GH AR+C G ++ CY C + G
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERG 89
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECTQG 200
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 45.2 bits (102), Expect = 3e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 164 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQGNRTGHFARDCKEE---ADRCYRCNGTGHI 334
P A AR + GR G R T E +G G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 335 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 454
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQG 200
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSG 224
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 45.2 bits (102), Expect = 3e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 164 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQGNRTGHFARDCKEE---ADRCYRCNGTGHI 334
P A AR + GR G R T E +G G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 335 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 454
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQG 200
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSG 224
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 45.2 bits (102), Expect = 3e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 164 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQGNRTGHFARDCKEE---ADRCYRCNGTGHI 334
P A AR + GR G R T E +G G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 335 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 454
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQG 200
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSG 224
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.006
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect(2) = 2e-04
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 368 SCYNCNKTGHIARNCPEGGR 427
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.018
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQGG 203
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 34.3 bits (75), Expect = 0.054
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGG 424
CY C + GH+AR+C EGG
Sbjct: 131 CYKCGEPGHMARDCSEGG 148
Score = 24.6 bits (51), Expect(2) = 2e-04
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQ 352
CY+C GH+AR+ ++
Sbjct: 131 CYKCGEPGHMARDCSE 146
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +2
Query: 290 EEADRCYRCNGTGH----IAREFA-QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 451
+EA+ C RC G GH E++ + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 452 NCNKSG 469
C + G
Sbjct: 81 RCGQLG 86
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 302 RCYRCNGTGHIAR-EFAQSPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 469
+CY CN GH+ E + SCY C + GH C +S + +C+ C + G
Sbjct: 54 KCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREG 111
Score = 35.1 bits (77), Expect = 0.031
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQSPDE---PSCYNCNKTGHIARNC 412
CYRC GH + D+ PSC+ C + GH C
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 34.7 bits (76), Expect = 0.041
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Frame = +2
Query: 200 GRGVAGFRFQSAT*EVLQGNRTGHFARDCKEEADRCYR--CNGTGHIAREFAQSPDEPS- 370
G + RFQ T E GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 371 -----CYNCNKTGHIARNCPEGGR 427
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 30.7 bits (66), Expect = 0.66
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 75 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 209
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 39.5 bits (88), Expect = 0.001
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 25/114 (21%)
Frame = +2
Query: 260 RTGHFARDCKEEADR-----------CYRCNGTGHIAREF-AQSPD---EPS-------- 370
+ GH+ARDC ++D C++C GH +R+ AQS + EP
Sbjct: 244 KEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSS 303
Query: 371 --CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPG 526
CY C K GH +R+C G+ S Q +SG + +T T D CGK G
Sbjct: 304 GECYKCGKQGHWSRDCT--GQSSNQQF-----QSGQAKSTSSTG-DCYKCGKAG 349
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 105 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 242
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 20/75 (26%)
Frame = +2
Query: 305 CYRCNGTGHIARE-FAQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 427
CY+C GH AR+ QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 428 -ESATQTCYNCNKSG 469
S++ CY C K G
Sbjct: 299 SSSSSGECYKCGKQG 313
Score = 33.9 bits (74), Expect = 0.071
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 132 AMSSSVCYKCNRTGHFARECT 194
A + + CYKC + GH+AR+CT
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT 253
Score = 33.9 bits (74), Expect = 0.071
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 230 SAT*EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARN 409
S++ E + + GH++RDC ++ +G A+ + + D CY C K GH +R+
Sbjct: 301 SSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRD 354
Query: 410 CPEGGRESAT 439
C + + T
Sbjct: 355 CTSPAQTTNT 364
Score = 33.9 bits (74), Expect = 0.071
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECT 194
SS CYKC + GH++R+CT
Sbjct: 302 SSGECYKCGKQGHWSRDCT 320
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +3
Query: 105 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKATAQ 266
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+K Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +2
Query: 197 GGRGVAGFRFQSAT*EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEP--S 370
GGRG G + GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 371 CYNCNKTGHIARNCPEGG 424
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.006
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.013
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 135 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 239
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEG 421
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 251 QGNRTGHFARDCKEEADRCYRCNGTGHIARE 343
+G R G R E +CY C GH ARE
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFARE 103
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 135 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 239
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEG 421
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 251 QGNRTGHFARDCKEEADRCYRCNGTGHIARE 343
+G R G R E +CY C GH ARE
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFARE 103
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 239
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 30.3 bits (65), Expect = 0.88
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGG 424
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 302 RCYRCNGTGHIARE 343
+CY C TGH ARE
Sbjct: 100 KCYECGETGHFARE 113
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSG 469
D +CY C K GH AR+C + +A TCY C++ G
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEG 69
Score = 35.5 bits (78), Expect = 0.023
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Frame = +2
Query: 305 CYRCNGTGHIARE--FAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNC 457
CY+C GH AR P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Score = 31.9 bits (69), Expect = 0.29
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 150 CYKCNRTGHFAREC 191
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 36.3 bits (80), Expect = 0.013
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 275 ARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 451
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 452 NCNKSGTSPATVPTAQDVLVCG 517
C G + T P ++ ++ G
Sbjct: 294 GCGGKGHNRRTCPKSKSIVTKG 315
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 266 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP 415
GH +R C++ C+G + E +C C K GH R CP
Sbjct: 330 GHNSRTCRKPTGVNPSCSGEN--SGEDGVGKITYACGFCKKMGHNVRTCP 377
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.023
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 150 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 239
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGG 424
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.054
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVSRDSG 224
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.3 bits (65), Expect = 0.88
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 371 CYNCNKTGHIARNCP-EGGRE 430
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.9 bits (74), Expect = 0.071
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPGTSRA 538
C+ C + GH +R+CP SA N S ++P+ +P + K GTS A
Sbjct: 8 CFKCGRPGHWSRDCP----SSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIA 59
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVVS 212
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.16
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.22
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 362 EPSCYNCNKTGHIARNCPEGG 424
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 466
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = +2
Query: 290 EEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 460
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 461 KSGTSPATVPTAQDVLVC 514
G P ++ ++ C
Sbjct: 256 GKGKLPCPTCQSRGLIKC 273
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 362 EPSCYNCNKTGHIARNCPEGGRESATQ 442
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.38
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.50
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 362 EPSCYNCNKTGHIARNCPEGG 424
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 242 EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDE 364
+V Q + G ++ K D C++C GH AR+ + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.38
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGG 203
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.50
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 362 EPSCYNCNKTGHIARNCPEGG 424
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 242 EVLQGNRTGHFARDCKEEADRCYRCNGTGHIAREFAQSPDE 364
+V Q + G ++ K D C++C GH AR+ + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.66
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 147 VCYKCNRTGHFAREC 191
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 0.88
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 371 CYNCNKTGHIARNC 412
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.88
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 311 RCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGG 424
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 147 VCYKCNRTGHFARECTQGG 203
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.88
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 120 SKPIAMSSSVCYKCNRTGHFAREC 191
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.88
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 147 VCYKCNRTGHFARECTQGG 203
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +2
Query: 287 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 466
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 467 GTSPAT 484
G+ T
Sbjct: 128 GSLTCT 133
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 463
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 463
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 332 IAREFAQSP-DEPSCYNCNKTGHIARNCP 415
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 4.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 150 CYKCNRTGHFAREC 191
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Frame = +2
Query: 323 TGHIAREFAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 454
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 455 CNKSGTSPATVPTA 496
C + AT P A
Sbjct: 648 CFQLSHWAATCPNA 661
>At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A26)
identical to Cytochrome P450 71A26 (SP:Q9STK7)
{Arabidopsis thaliana}
Length = 489
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 214 GIPVSIGNVRSASRQPHRTLCEGLQGRG*PLL 309
G+P+ IGN+ R PHR+LC L R PL+
Sbjct: 37 GLPL-IGNLHQLGRHPHRSLC-SLSHRYGPLM 66
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 371 CYNCNKTGHIARNCP 415
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 135 MSSSVCYKCNRTGHFAREC 191
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 445
C C GTGHI +E+ S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 445
C C GTGHI +E+ S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 491
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 398 IARNCPEGGRESATQTCYNCNKSGTSPATVPTAQDVLVCGKPGTSRAI 541
+ + C + +E NC SGT+ TV LV G G SRA+
Sbjct: 176 LLKTCQQMDKELKMHPTINCFCSGTTSVTVIKQGKDLVVGNIGDSRAV 223
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 368 SCYNCNKTGHIARNCPE 418
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 332 IAREFAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 466
++R+ ++S E +C+ C + GH +CP E + Y ++
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEA 192
>At3g23270.1 68416.m02933 regulator of chromosome condensation (RCC1)
family protein contains Pfam domain PF00415: Regulator of
chromosome condensation (RCC1); similar to zinc finger
protein (GI:15811367) [Arabidopsis thaliana]; similar to
chromosome condensation regulator protein (GI:22770461)
[Cicer arietinum]
Length = 1045
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 446 CYNCNKSGTSPATVPTAQDVLVCGKPGTSRAIDE 547
CY+ N S +S ++ PTA D V +P + ++ E
Sbjct: 1001 CYSSNSSSSSSSSNPTASDSPVAPQPPSDPSVPE 1034
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 358 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL 450
G +VV LQ DGPH ++R G AD+L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVL 608
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 302 RCYRCNGTGHIAREFAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 424
RC CNGTG + ++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 305 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP 415
C+RCNG+ + + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 218
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 3.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 359 DEPSCYNCNKTGHIARNCPE 418
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 78 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 221
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 371 CYNCNKTGHIARNCPEGG 424
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At3g48310.1 68416.m05272 cytochrome P450 71A22, putative (CYP71A22)
Identical to Cytochrome P450 71A22
(SP:Q9STL1)[Arabidopsis thaliana]
Length = 490
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 229 IGNVRSASRQPHRTLCEGLQGRG*PLL 309
IGN+ R PHR+LC L R PL+
Sbjct: 42 IGNLHQLGRHPHRSLC-SLSNRYGPLM 67
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.9 bits (59), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 371 CYNCNKTGHIARNC 412
C+NC H+ARNC
Sbjct: 88 CFNCGDMNHLARNC 101
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 305 CYRCNGTGHIARE----FAQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 439
C+ C H+AR + PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 284 CKEEADRCYRCNGTGHIAREFA 349
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 367
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 527 CRACRTLARLVPSGQLREMCRTCCSYSRSASQTPAPPRDSSVRCGP 390
C CRT +L PSG C C + + A APP S P
Sbjct: 18 CSGCRTPLQL-PSGARSIRCALCQAVTHIADPRTAPPPQPSSAPSP 62
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +2
Query: 287 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 442
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 443 TCYNCNKSG 469
C NC+ +G
Sbjct: 273 RCSNCSGAG 281
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +2
Query: 287 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 442
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 443 TCYNCNKSG 469
C NC+ +G
Sbjct: 273 RCSNCSGAG 281
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 332 IAREFAQSPDEPS-CYNCNKTGHIARNC 412
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQG 200
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 323 TGHIAREFAQSPDEPSCYNCNKTGHIARNC 412
T +A + + P P C NC + GH+ C
Sbjct: 301 TARVAVTYPRPP--PKCLNCGRYGHLLSRC 328
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 338 REFAQSPDEPSCYNCNKTGHIARNCPEGG 424
R + ++ D PSC CN+ G A CP G
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG 215
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = -1
Query: 277 RKVSCAVALKHFSRCRLKPESRDTTPPCVHSRAKCP 170
R + +H L P +R T P C ++CP
Sbjct: 592 RNAKAGGSFRHHGELELLPNNRSTRPLCNSCHSRCP 627
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 305 CYRCNGTGHIARE-FAQSPDEP------SCYNCNKTGHIARNCP 415
C C T H+ + SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 440 ASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA 327
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 398 CGPSCCSCNTTARPGSVRTRALCAPCRYICS 306
C P CC CN+ + VRT Y CS
Sbjct: 638 CRPLCCVCNSRCKLPFVRTLPEDGADLYFCS 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,833
Number of Sequences: 28952
Number of extensions: 252767
Number of successful extensions: 1206
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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