Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30458
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 138 1e-33
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 138 1e-33
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.73
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 2.2
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 27 3.0
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 6.8
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 6.8
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 138 bits (333), Expect = 1e-33
Identities = 68/90 (75%), Positives = 75/90 (83%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV
Sbjct: 53 GRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLV 112
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
A+ GPREDSTRIG AGTVRRQ + P
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
Score = 117 bits (282), Expect = 2e-27
Identities = 57/75 (76%), Positives = 65/75 (86%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYA
Sbjct: 129 SAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYA 188
Query: 664 IKKKDELERVAKSNR 708
IKKKDELERVAKSNR
Sbjct: 189 IKKKDELERVAKSNR 203
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 90 AGSVVVETMSLPQAADIPEIKLYGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSLAGMH 269
A S++ + +SL + IKL+ ++ V+V D+SL DYI++ + LPH+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 270 T 272
T
Sbjct: 57 T 57
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 138 bits (333), Expect = 1e-33
Identities = 68/90 (75%), Positives = 75/90 (83%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV
Sbjct: 53 GRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLV 112
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
A+ GPREDSTRIG AGTVRRQ + P
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
Score = 117 bits (282), Expect = 2e-27
Identities = 57/75 (76%), Positives = 65/75 (86%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYA
Sbjct: 129 SAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYA 188
Query: 664 IKKKDELERVAKSNR 708
IKKKDELERVAKSNR
Sbjct: 189 IKKKDELERVAKSNR 203
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 111 TMSLPQAADIPE---IKLYGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSLAGMHT 272
T SL + E IKL+ ++ V+V D+SL DYI++ + LPH+ T
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQT 57
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +2
Query: 302 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 460
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 361 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 459
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +1
Query: 430 TRDCHYQLWTP*RFD*DRSCGYSSSSTVDVSPLRRVNQAI----WLLCTGA 570
TR +LW P + RS + + PL+R N +I WL+C GA
Sbjct: 157 TRAFGMRLWKPALYKKFRSINRDADIDIHDEPLKRPNTSISNVIWLICFGA 207
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 554 SQIAWLTRRKGETSTVDDELYP 489
SQ AWL+R KG S + +YP
Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 618
S GY + ST ++PLR NQ I+ L T A+ + I + + ++
Sbjct: 409 SVGYIAKSTFKLNPLRLRNQYIYFL-TNAQVINYITILAVPQLIS 452
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 635 QLRVHLTPTPSKRRTSWSVLLNPTV 709
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 310 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 432
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +3
Query: 111 TMSLPQAADIPEIKLYGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSLAGMHTSVSVKP 290
T+ LP ++ E+K+ +D + + L D I V K+ LP+ + + TS+++
Sbjct: 1302 TVLLPWLQNL-ELKMDVENKTFD-SFTAVILIDLIEVTAKFTNDLPNEIEALWTSLALSR 1359
Query: 291 SAQSWSAL 314
+W+ +
Sbjct: 1360 HKSNWTVI 1367
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +3
Query: 189 SDMSLQDYISVKEKYAKYLPHSLAGMHTSVSVK 287
SDM ++ + ++K +Y+K +P+++ + T ++K
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNTVVLVTTVKALK 738
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,452
Number of Sequences: 5004
Number of extensions: 64176
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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