Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30458
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 155 5e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 154 8e-38
03_06_0610 + 35052455-35053429,35054936-35055511 32 0.44
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.4
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 9.4
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 9.4
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 155 bits (375), Expect = 5e-38
Identities = 73/90 (81%), Positives = 79/90 (87%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V
Sbjct: 49 GRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIV 108
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
AIINSGPRED+TRIG AG VRRQ + P
Sbjct: 109 DAIINSGPREDATRIGSAGAVRRQAVDISP 138
Score = 125 bits (302), Expect = 3e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 125 SAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 184
Query: 664 IKKKDELERVAKSNR 708
IKKKDE+ERVAK+NR
Sbjct: 185 IKKKDEIERVAKANR 199
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = +3
Query: 144 EIKLYGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSLAGMHTS 275
E+KL+ RWS DVQV+D+SL DY++V K+A YLPH+ AG +++
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHT-AGRYSA 53
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 154 bits (373), Expect = 8e-38
Identities = 72/90 (80%), Positives = 79/90 (87%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V
Sbjct: 50 GRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIV 109
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
AIINSGPRED+TRIG AG VRRQ + P
Sbjct: 110 DAIINSGPREDATRIGSAGAVRRQAVDISP 139
Score = 125 bits (302), Expect = 3e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 126 SAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 185
Query: 664 IKKKDELERVAKSNR 708
IKKKDE+ERVAK+NR
Sbjct: 186 IKKKDEIERVAKANR 200
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 IKLYGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSLAGMHTS 275
+KL+ WS DVQV+D+SL DY++V K+A YLPH+ AG +++
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHT-AGRYSA 54
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 197 HIRDLHIVATPSAVKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 30
++ ++V TP AV L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 29 LK 24
K
Sbjct: 476 AK 477
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 79 T*PRQAAWLWKPCLYHKPPTF 141
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 374 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQPLMFHPCAESTKQSG 553
++H + + LL NP++ + I + +E +GRAG ++++ + C ES G
Sbjct: 75 IRHGWSMRDLLL--NPIEEVA---IPARGKEKVGEVGRAGAMQKEEIKCFNCGESGHHQG 129
Query: 554 F 556
F
Sbjct: 130 F 130
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 248 SFTGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 412
S TG+ R K I + S++ HG N ++++AV +K +I+HLL G
Sbjct: 1311 SNTGKGFVGRTTKVAAAISALVVGSVI-HGVVNIERMVAVLKIKDGLDILHLLRG 1364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,703
Number of Sequences: 37544
Number of extensions: 422017
Number of successful extensions: 1072
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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