Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30458
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               167   1e-41
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   1.0  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     31   1.4  
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)              30   2.4  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.1  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               28   7.2  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   7.2  
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  167 bits (405), Expect = 1e-41
 Identities = 78/90 (86%), Positives = 83/90 (92%)
 Frame = +2

Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
           GRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV
Sbjct: 122 GRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLV 181

Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
            AIINSGPREDSTRIGRAGTVRRQ +   P
Sbjct: 182 NAIINSGPREDSTRIGRAGTVRRQAVDVSP 211



 Score =  132 bits (319), Expect = 3e-31
 Identities = 63/66 (95%), Positives = 66/66 (100%)
 Frame = +1

Query: 511 VDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELER 690
           VDVSPLRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELER
Sbjct: 207 VDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELER 266

Query: 691 VAKSNR 708
           VAKSNR
Sbjct: 267 VAKSNR 272



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = +3

Query: 99  VVVETMSLPQAADIPEIKLYGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSLAGMHTS 275
           VV +  +   A ++P+IKL+G+WS  DVQVSD+SL DYI+VKEKY+ YLPH+ AG + +
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHT-AGRYAA 126



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +3

Query: 99  VVVETMSLPQAADIPEIKLYGRWSCYDVQVSDMSL 203
           VV +  +   A ++P+IKL+G+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 598 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 699
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 162 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSLAGMHTSVSVKPSAQ 299
           RWSC   Q  + +++ Y+  KE  ++ LP       +SV+  PS +
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104


>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
          Length = 603

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 319 VCKALHDWALGFTETLVCIPASE*GKYFAYFSLTEM*SCRDISETC 182
           VC+  H+W +G    L+  P  +  K F  FS T+M SC  ++  C
Sbjct: 307 VCRNRHNWDIG-ASMLLRYPLDQSNKSF--FSWTDMASCDQLATAC 349


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 636  CIN*FICNTLCDCFNISECSLTCTC 562
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 49  QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFTADGVATMCKSLICLCRTTFPLKR 228
           ++WP  T + T   +A W W    Y    TFL        ++  C  ++   R T+P K 
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRKL 758

Query: 229 ST--QNIYLIHWQVCTQA 276
                N+ L+   +C  A
Sbjct: 759 HALFMNLLLLFVSICRAA 776


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
 Frame = -2

Query: 315 VRRSTIGH-------WALRKRLCAYLPVNEVNILRTSL*RKCSPAETYQRLAHRSNSICR 157
           VRRS I H       WAL  +    +P  E+  L   L R+ S    Y  L H+   + +
Sbjct: 283 VRRSVIDHYLLSMPCWALPAKWFTKIPTKELYHLDVKLTRRQSHDRHYDSLVHKKEQVVK 342

Query: 156 KA*FQECRR 130
                +C +
Sbjct: 343 HEWMPKCSK 351


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 618 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 529
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 48  PIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKL--YGRWSCYDVQVSDMSLQ 206
           P   E+ WNDD  E   V+   +SLP+   + E+ L  Y  +S  +VQ+     Q
Sbjct: 210 PHFVEKEWNDDTYE---VMRGMISLPEVIAVGEVGLDFYRNYSKKEVQIEAFEKQ 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,550,155
Number of Sequences: 59808
Number of extensions: 509738
Number of successful extensions: 1386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)