Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30458
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 152 3e-37
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 152 3e-37
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 152 3e-37
At4g39450.1 68417.m05582 expressed protein 29 4.5
At1g59590.1 68414.m06702 expressed protein 28 7.9
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 152 bits (368), Expect = 3e-37
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 57 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVII 116
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
AI+NSGPRED+TRIG AG VRRQ + P
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 126 bits (303), Expect = 2e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 133 SAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192
Query: 664 IKKKDELERVAKSNR 708
IKKKDE+ERVAK+NR
Sbjct: 193 IKKKDEIERVAKANR 207
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 126 QAADIPEIKLYGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSLAGMHT 272
Q A E+KL+ RW+ DV V+D+SL DYI V+ K+A ++PH+ AG ++
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHT-AGRYS 60
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 152 bits (368), Expect = 3e-37
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 57 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVII 116
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
AI+NSGPRED+TRIG AG VRRQ + P
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 126 bits (303), Expect = 2e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 133 SAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192
Query: 664 IKKKDELERVAKSNR 708
IKKKDE+ERVAK+NR
Sbjct: 193 IKKKDEIERVAKANR 207
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 126 QAADIPEIKLYGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSLAGMHT 272
Q A E+KL+ RW+ DV V+D+SL DYI V+ K+A ++PH+ AG ++
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHT-AGRYS 60
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 152 bits (368), Expect = 3e-37
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = +2
Query: 257 GRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLV 436
GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++
Sbjct: 57 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVII 116
Query: 437 TAIINSGPREDSTRIGRAGTVRRQPLMFHP 526
AI+NSGPRED+TRIG AG VRRQ + P
Sbjct: 117 DAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Score = 126 bits (305), Expect = 1e-29
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 484 SCGYSSSSTVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 663
S G VD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 133 SAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192
Query: 664 IKKKDELERVAKSNR 708
IKKKDE+ERVAK+NR
Sbjct: 193 IKKKDEIERVAKANR 207
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +3
Query: 144 EIKLYGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSLAGMHT 272
E+KL+ RWS DV V+D+SL DYI V+ K+A ++PH+ AG ++
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHT-AGRYS 60
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 514 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 657
DVSPL + IWL T ARE + + I +A E I AA S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 640 KGSSNSYAIKKKDELERVAKSNR 708
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,928
Number of Sequences: 28952
Number of extensions: 340667
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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