Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30457
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   6.9  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   9.1  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   9.1  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 429 WLEKDQTCHICC*TCIG 479
           WLE+ QTC IC  + IG
Sbjct: 340 WLERQQTCPICRRSVIG 356


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 130 NEPNRNIFNLCISLFNECLFRNKYSHSD 213
           N P +N+FN CI   ++  FR     SD
Sbjct: 468 NLPTKNLFNACIGAKDDLFFRYLSLFSD 495


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 544 KKNPSLPLYQKNYG*NGIMNII 609
           +KN  +P+YQ+ +G +GI  ++
Sbjct: 101 EKNKLVPIYQETFGKSGIRRVV 122


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 361 RPDFHHILQYHHIVGLHRPMRPALRHLMQCLRYLELPSFN 242
           R    H+ Q  H VG HR    + +H +      E  SFN
Sbjct: 111 RAKIDHLEQQMHTVGAHRNKNESRKHTIFVDNVKEAKSFN 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,262
Number of Sequences: 5004
Number of extensions: 72185
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)