Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30457
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 108 6e-24
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 49 5e-06
03_05_0219 - 22059388-22059729,22059838-22059999 48 8e-06
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 47 2e-05
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569... 35 0.083
07_01_0036 + 298626-299573,299973-300239 30 1.8
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 30 2.4
07_01_0219 - 1627669-1629765 29 5.4
05_07_0048 + 27321906-27322190,27322897-27323441,27323552-273236... 29 5.4
10_08_0041 - 14374684-14377339,14377371-14378233 28 9.5
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 28 9.5
10_08_0032 - 14288522-14290465 28 9.5
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 108 bits (259), Expect = 6e-24
Identities = 50/78 (64%), Positives = 60/78 (76%)
Frame = +1
Query: 274 TALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHA 453
+A+DAV G S CE +CDGTVG GGSPDENGETTLDALIM+G TM IGAV +R +K
Sbjct: 99 SAVDAVVAGCSACEVLRCDGTVGPGGSPDENGETTLDALIMDGTTMEIGAVAAMRYVKDG 158
Query: 454 ISVARHVLDHTKHSFLVG 507
I A+ V+DHT+H+ LVG
Sbjct: 159 IRAAKLVMDHTEHTLLVG 176
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 513 ATQFAVEMGFQEES-LTTSVSKKLWMKWHNEHHCQPNFWLNVSPDPTRNCGPY 668
AT FA+ MG + L++ S W W ++HCQPNFW NV P +CGPY
Sbjct: 179 ATSFAISMGLVGPADLSSPESIGKWTIWR-QNHCQPNFWKNVV--PAGSCGPY 228
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +1
Query: 274 TALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHA 453
T+LDAV V ED G G + E+G DA IM+G T GAVG ++ +K+
Sbjct: 80 TSLDAVAAAIQVLEDDPITNA-GRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNP 138
Query: 454 ISVARHV 474
I +A H+
Sbjct: 139 IQIALHL 145
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 48.0 bits (109), Expect = 8e-06
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 277 ALDAVEQGASVCEDQQCDG-TVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHA 453
ALD VE V E + C G G +G ++A +M+G T+ GAV GL + +A
Sbjct: 47 ALDVVE--LVVRELENCPHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNA 104
Query: 454 ISVARHVLDHTKHSFL 501
+S+AR V++ T H +L
Sbjct: 105 VSLARLVMEKTPHIYL 120
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +1
Query: 277 ALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHAI 456
ALD VE E + G G + G ++A IM+GR GAV G+ +K+ +
Sbjct: 47 ALDVVEAVVRELESDPFFNS-GRGSALTRLGTVEMEASIMDGRGRRCGAVSGVSTVKNPV 105
Query: 457 SVARHVLDHTKHSFL 501
S+AR V+D + HS+L
Sbjct: 106 SLARLVMDKSPHSYL 120
>03_05_1022 -
29756127-29756198,29756335-29756421,29756783-29756968,
29757088-29757188,29757379-29757484,29757564-29757638,
29757772-29757903,29771476-29771655,29772032-29772234,
29773296-29773602
Length = 482
Score = 34.7 bits (76), Expect = 0.083
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 639 PDPTRNCGPYQKHEYSQHLLKKSHLNVDRFNHDTIGMVAIDH 764
P P + G + KHEY + ++++ + N F H+ +G + +++
Sbjct: 60 PAPDDDPGNFDKHEYRRRMIRQGNYNRKSFGHEILGAINLEY 101
>07_01_0036 + 298626-299573,299973-300239
Length = 404
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 328 DGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRI 444
+G GYG P E ++ L+++GR M GG+RR+
Sbjct: 222 EGCGGYGMVPFEVSAPNVEELVLSGRNMVAVEKGGVRRL 260
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GAVGGLRRIKHAISVARHVLDHTKHSFLVGGLPPNL 525
G + GL AI ARH+ DHT ++V LP L
Sbjct: 528 GLLAGLEEWNMAIKCARHIDDHTGSIYVVKMLPHKL 563
>07_01_0219 - 1627669-1629765
Length = 698
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 373 FLHFRPDFHHILQY-HHIVGLHRPMRPALRHLMQCLRYLELPSFNR*ICERPSSNHYGNI 197
F++ RPD ++QY V L M ++ M L ++ F+ + PSSN GNI
Sbjct: 630 FINARPDMRRVMQYLKREVALPELMPTSMSFHM--LALMQNDGFDSYVQSYPSSNSKGNI 687
Query: 196 CFGTN 182
T+
Sbjct: 688 STATS 692
>05_07_0048 +
27321906-27322190,27322897-27323441,27323552-27323638,
27323878-27324116,27324909-27325114,27325227-27325310
Length = 481
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 328 DGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSFLVG 507
DGT G GG +E G +G G VG + A+SVA++ + + +VG
Sbjct: 15 DGTAGVGGGREEEGGDRW----WSGLAREAGKVGSMALPMAAMSVAQNAV-QVASNMMVG 69
Query: 508 GLP 516
LP
Sbjct: 70 HLP 72
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 418 GAVGGLRRIKHAISVARHVLDHTKHSFLVGGLPPNL 525
G + GL AI ARH+ +HT ++V LP L
Sbjct: 905 GLLAGLEEWNMAIKCARHIDNHTGSIYVVKMLPHKL 940
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 418 GAVGGLRRIKHAISVARHVLDHTKHSFLVGGLPPNL 525
G + GL AI ARH+ DHT++ ++ + NL
Sbjct: 806 GLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAENL 841
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 418 GAVGGLRRIKHAISVARHVLDHTKHSFLVGGLPPNL 525
G + GL AI ARH+ DHT++ ++ + NL
Sbjct: 424 GLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAENL 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,005,338
Number of Sequences: 37544
Number of extensions: 450170
Number of successful extensions: 1098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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