Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30457
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38156| Best HMM Match : Asparaginase_2 (HMM E-Value=1.5e-32)       120   2e-27
SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_47001| Best HMM Match : Asparaginase_2 (HMM E-Value=2.5e-40)        58   1e-08
SB_33572| Best HMM Match : Asparaginase_2 (HMM E-Value=0)              56   4e-08
SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)        50   2e-06
SB_45081| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             31   0.78 
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 29   5.5  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      29   5.5  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  28   9.6  
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           28   9.6  

>SB_38156| Best HMM Match : Asparaginase_2 (HMM E-Value=1.5e-32)
          Length = 373

 Score =  120 bits (288), Expect = 2e-27
 Identities = 54/78 (69%), Positives = 69/78 (88%)
 Frame = +1

Query: 274 TALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHA 453
           +ALDAVE G SVCE +QCDGTVGYGGSP+E+GETTLDA+IM+G T ++GAVG L+R+K+A
Sbjct: 86  SALDAVEVGCSVCEVEQCDGTVGYGGSPNEDGETTLDAMIMDGITHDVGAVGCLKRVKNA 145

Query: 454 ISVARHVLDHTKHSFLVG 507
           I VAR V++H+K +FLVG
Sbjct: 146 IGVARSVMEHSKETFLVG 163


>SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/77 (41%), Positives = 46/77 (59%)
 Frame = +1

Query: 277 ALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHAI 456
           +LDAVE    V ED       G+G   +  GE  +DA+IM+GR +N+G VGG+  + + I
Sbjct: 243 SLDAVEAAVKVLEDIAVFNA-GHGSKLNNRGEVEMDAMIMDGRDLNVGGVGGISGVSNPI 301

Query: 457 SVARHVLDHTKHSFLVG 507
           SVAR V+  + H  L+G
Sbjct: 302 SVARKVMTESNHCLLIG 318


>SB_47001| Best HMM Match : Asparaginase_2 (HMM E-Value=2.5e-40)
          Length = 423

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/77 (36%), Positives = 47/77 (61%)
 Frame = +1

Query: 277 ALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHAI 456
           A+DAVE    V ED       GYG   +  G  ++DA++M+GR+++ G V GLR + + I
Sbjct: 98  AIDAVEAAIRVFEDNALFNC-GYGSKLNALGRVSMDAMMMDGRSIDYGGVCGLRNVANPI 156

Query: 457 SVARHVLDHTKHSFLVG 507
           +VA+ ++ +++H  L G
Sbjct: 157 TVAKKLMTNSRHCLLTG 173


>SB_33572| Best HMM Match : Asparaginase_2 (HMM E-Value=0)
          Length = 427

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +1

Query: 274 TALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHA 453
           +A+DAVE      ED       GYG +    G   +DA+IM+G T++ GAV  ++ + + 
Sbjct: 92  SAVDAVEAAVKSLEDNLVFNA-GYGSALTVTGTVEMDAMIMDGCTLDTGAVACVKGVVNP 150

Query: 454 ISVARHVLDHTKHSFLV 504
           +S+ARHV+  T H  LV
Sbjct: 151 VSLARHVMTDTPHCMLV 167



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 274 TALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMN 414
           +A+DAVE      ED       GYG +  ++G   +DA+IM+G T++
Sbjct: 380 SAVDAVEAAVKSLEDNLVFNA-GYGSALTDDGTVEMDAMIMDGCTLD 425


>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
          Length = 477

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 38/56 (67%)
 Frame = +1

Query: 340 GYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSFLVG 507
           GYG   +  G  ++DA++M+GR+++ G V GLR + + I+VA+ ++ +++H  L G
Sbjct: 303 GYGSKLNALGRVSMDAMMMDGRSIDYGGVCGLRNVANPITVAKKLMTNSRHCLLTG 358


>SB_45081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 277 ALDAVEQGASVCEDQQCDG--TVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLR 438
           +LDA+E+G +  ED    G   VG GG P+  G    D+ +M G     GAV  L+
Sbjct: 70  SLDALEKGINDVEDDPLTGRYVVGRGGYPNSEGVVECDSAVMLGDHCQFGAVAALQ 125


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 458 DMACLILLKPPTAPIFIVLPFIIRASNVVSPFSSGLPPYPTVPS-HCWS 315
           D  CLIL  PP+ PI  +     R S+ V P ++G PP   + S H W+
Sbjct: 582 DAVCLILQLPPS-PIPSITQKHYRRSHEVLPATTGRPPARVIGSCHVWA 629


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -1

Query: 530 YCKLGGKPPTKKE---CFVWSNTCLATDMAC 447
           YCK+  K P K E   CF   +TC + D  C
Sbjct: 369 YCKIDWKIPDKTERRYCFQTKSTCQSNDKGC 399


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 410 IVLPFIIRASNVVSPFSSGLPP-YPTVPSHCWSSQTDAPCSTAS 282
           +VLP  + +++V +P+++  PP   T PS    S +D   ST S
Sbjct: 729 VVLPTTVTSTSVFTPYTANAPPTVATQPSIVSPSVSDPSTSTTS 772


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -1

Query: 764 VINSHHTYRVMVEPIHIKMALLK*MLRVLMFLIWT 660
           V+ + +   V V+P  +KMAL++ + R+ +F +W+
Sbjct: 415 VVATANPIAVTVKPYFLKMALMRSLSRISVFPLWS 449


>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 428 PTAPIFIVLPFIIRASNVVSPFSSGLPPYPTVP 330
           PTAP ++ LP+ I  + V  P+ +  PPY T P
Sbjct: 217 PTAPTYVALPY-ITPTFVAPPYVT--PPYVTPP 246


>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 371 SPFSSGLPPYPTVPSHCWSSQTDAPCSTASNAVPP 267
           S  S  LPP P++ S   SS +  P S++S ++PP
Sbjct: 89  SSSSQSLPPPPSLSSQT-SSSSPPPSSSSSQSLPP 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,235,290
Number of Sequences: 59808
Number of extensions: 517162
Number of successful extensions: 1275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)