Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30457
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 605 SLSTKFLAECQSRPHS 652
           SL T+FL  C+SR HS
Sbjct: 337 SLDTQFLQVCRSRRHS 352


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 353 LPPYPTVPSHCWSSQTDAPCST 288
           L P   + + CW+   D  CST
Sbjct: 149 LTPTERLEALCWTQDEDVICST 170


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 353 LPPYPTVPSHCWSSQTDAPCST 288
           L P   + + CW+   D  CST
Sbjct: 202 LTPTERLEALCWTQDEDIICST 223


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 540 FQEESLTTSVSKKLWMKWHNEHHCQPNF 623
           F++E+       K W KW++    Q N+
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 540 FQEESLTTSVSKKLWMKWHNEHHCQPNF 623
           F++E+       K W KW++    Q N+
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 540 FQEESLTTSVSKKLWMKWHNEHHCQPNF 623
           F++E+       K W KW++    Q N+
Sbjct: 682 FKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
 Frame = +1

Query: 346  GGSPDENGETTLD----ALIM-----NGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSF 498
            GG PD+  ET  D    A         G    +G +GGL     A +   H  +   HSF
Sbjct: 1681 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSF 1740

Query: 499  L 501
            +
Sbjct: 1741 M 1741


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
 Frame = +1

Query: 346  GGSPDENGETTLD----ALIM-----NGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSF 498
            GG PD+  ET  D    A         G    +G +GGL     A +   H  +   HSF
Sbjct: 1677 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSF 1736

Query: 499  L 501
            +
Sbjct: 1737 M 1737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,878
Number of Sequences: 438
Number of extensions: 5022
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)