Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30456
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 118 4e-27
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 37 0.015
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 37 0.019
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.18
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.72
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 30 2.2
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 3.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.9
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.9
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.7
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.9
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 118 bits (285), Expect = 4e-27
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 409
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +3
Query: 507 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 686
KI E+PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202
Query: 687 GPLIIFNKDQGL 722
GPLII+N DQGL
Sbjct: 203 GPLIIYNNDQGL 214
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3
Query: 81 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 257
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGH+
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 451 SVAATGVPALVQARGHIIERFPSFP 525
++AA+ +PAL+ ARGH IE+ P
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVP 148
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +2
Query: 242 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 403
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +2
Query: 242 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 397
GG + WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +2
Query: 242 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 403
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 255
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 353 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 261
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 353 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 261
Y +HP T+ YHH H + ++ Q+P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 285
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 674 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 525
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVTSLL 240
HH + RH R + YHHH + H +P FVT+++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHYP----HHHHHPCTIIIFVTTII 608
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 377 TYVHHDTCYRRHPDRTYEYHHHGHA 303
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 380 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 276
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 209 QELEAALLREQGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 334
+ E+AL E+ W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 373
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYEYHHH 312
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 148 GRGLAAPCTVSLFSEYTDTKGRATDRLI 65
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 374 YVHHDTCYRRHPDRTYEYHHHGH 306
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYEYHHHGH 306
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 356 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 261
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = -3
Query: 380 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVTSLL 240
R + HH ++ + + + +HHH H H Q+ H + +++
Sbjct: 256 RYHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIINII 302
>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 722 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 630
Q LIL+ Y + L+T+++ F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,018,741
Number of Sequences: 59808
Number of extensions: 464565
Number of successful extensions: 1646
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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