Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30454
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   1.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   1.7  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   1.7  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   2.2  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   5.1  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   6.7  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   6.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   6.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   8.8  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +1

Query: 19  AVIYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLMAGSIVSQLTAAAMVAPTP 198
           A+ +  G L+TP V PV+                    G    GSI++Q + A  V P P
Sbjct: 624 AIAFHQGALVTPSVPPVIATVSKTNTTNTGVQQRGN-VGVTTTGSILTQSSPALPVQPVP 682

Query: 199 *GDAKHHPFSTS 234
              +K  P + S
Sbjct: 683 LAYSKPAPTTKS 694


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 315 FLHRIDKFIKNLNAF*FQIKRKGPILER 232
           +LH++D+FI+NL +   +   KGPI  +
Sbjct: 435 YLHQLDEFIENLKS---EFDYKGPIARK 459


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 30  WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 137
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 PFSTSLQDRTFSFYLELKCI 279
           PF   +QD+T  FY E K I
Sbjct: 118 PFYGKIQDKTIEFYKEFKLI 137


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 208 HHLMAWGLPWQQQSTVTQC 152
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 9   GRRCCNIWHWGSVDSISGSRARFQLSGNSG 98
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  GGAVIYGTGGLLTPLVA 63
           GGA+I  TGGL  P VA
Sbjct: 182 GGALIGLTGGLAAPFVA 198


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 9   GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 113
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 258 KRKGPILERCRERVMFSITSWRGGYHGSSSQ 166
           +R     E  R+RV FS+TS  G     SSQ
Sbjct: 70  RRANSTPEESRKRVSFSLTSNDGAKSDRSSQ 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,936
Number of Sequences: 5004
Number of extensions: 24173
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)