Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30454
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   2.6  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   3.5  
07_01_0479 + 3606663-3607448                                           27   3.5  
12_02_0315 - 17417161-17417401,17419426-17419616                       26   8.0  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     26   8.0  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = +3

Query: 72  RFQLSGNSGRKHSRCCTSILRKFNGR------QHCVTVDCCC 179
           R      +G+K  RCC S  R+   R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 60  GSRARFQLSGNSGRKHSRCCTS 125
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 50  VNRPPVPYITAPPTAF 3
           ++RPP+P ++APP A+
Sbjct: 148 ISRPPMPNLSAPPVAY 163


>12_02_0315 - 17417161-17417401,17419426-17419616
          Length = 143

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 21  CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 116
           C IW   ++ ++ G+++ F L+G       RC
Sbjct: 16  CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 126 CLCSSGCASCRYS 88
           C C +GC  C+YS
Sbjct: 14  CQCGNGCGGCKYS 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,487
Number of Sequences: 37544
Number of extensions: 189395
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)