Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30454
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               28   1.6  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   1.6  
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 28   2.1  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   2.1  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 30  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFNG 146
           + W  VDSI+ S+A+F  S  +   H    T  LR F+G
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR-FHG 302


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 18  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 137
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 271  LIPNKTKRSDPGAMSRTGDV*HHLMAWGLPWQQQSTVTQC 152
            + P+ T +S P   +   D   +++ W   WQ +  VT+C
Sbjct: 961  MTPSYTAQSHPWMTTALQDDLDNVLDWSAAWQMEFNVTKC 1000


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  WHWGSVDSISGSRARFQLSGNSGRKHSR 113
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 15   RCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFNGRQHCVTVDC 173
            +CC +   G   S +   +    SG +    +RCC ++L+  N  +H  T +C
Sbjct: 1386 QCCLLADNGQHSSTASCPSACSPSGCNPDCPARCCITVLQPLN-EKHNTTAEC 1437


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 21 CNIWHWGSVDSISGSRARF 77
          C + HWGSV + +  RAR+
Sbjct: 35 CQVPHWGSVRTFNVCRARY 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,262
Number of Sequences: 59808
Number of extensions: 201988
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)