Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30454
(328 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.26
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 7.4
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 7.4
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 26 7.4
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 26 7.4
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 25 9.7
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 25 9.7
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 25 9.7
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.26
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 186 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 34
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 254 EKVRSWSDVENG*CLASPHGVGATMAAAVN 165
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 254 EKVRSWSDVENG*CLASPHGVGATMAAAVN 165
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 254 EKVRSWSDVENG*CLASPHGVGATMAAAVN 165
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 6 RGRRC--CNIWHWGSVDSISGSRARFQLSGN 92
+G RC C HWGS + G+ R +GN
Sbjct: 979 QGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 57 SGSRARFQLSGNSG 98
S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 9 GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCT---SILRKFNGRQH 155
GR+ C + HW S + G + N GR C T ++L FN R H
Sbjct: 550 GRKLCWMHHWSSGTMVFG-------TANGGRFDLECTTFQMAVLFCFNDRAH 594
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 10 VGGAVIYGTGGLLTPLVA 63
VGG +I TGGL PLVA
Sbjct: 227 VGGVLIGLTGGLAAPLVA 244
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 39 GSVDSISGSRARFQLSGNSGRKHSR--CCTSILRKFNGRQHCVTVDCCCHGSPH 194
G V + F +G +H + C T +RK + +HC C + H
Sbjct: 23 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 39 GSVDSISGSRARFQLSGNSGRKHSR--CCTSILRKFNGRQHCVTVDCCCHGSPH 194
G V + F +G +H + C T +RK + +HC C + H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,886,584
Number of Sequences: 27780
Number of extensions: 148859
Number of successful extensions: 326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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