Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30454
         (328 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             29   0.56 
At5g07790.1 68418.m00892 expressed protein                             26   5.2  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    25   9.0  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 54  ISGSRARFQLSGNSGRKHSRCCTSILRKFNG 146
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   KRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 128
           KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 417 KRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   GRRCCNIWHWGSVDSISGSRARFQLSGNS 95
           G+ CC+ W+  S DS++   A   L G S
Sbjct: 48  GQDCCHNWYGISCDSLTHRVADINLRGES 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,944
Number of Sequences: 28952
Number of extensions: 139792
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)