Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30452
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 138 8e-34
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 125 8e-30
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 1e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 74 2e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 72 7e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 5e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 65 9e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 1e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 3e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 63 5e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 1e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 59 6e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 7e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 1e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 5e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 55 9e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 9e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 6e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 3e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 4e-04
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.40
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.69
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 3.7
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.9
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 4.9
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 6.4
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 138 bits (334), Expect = 8e-34
Identities = 64/86 (74%), Positives = 77/86 (89%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+LILAPTRELAQQIQKVV+ALGD +N +CHACIGGT VR+D+ L++GVHVVVGTPGRV+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149
Query: 433 DMITRRALHANTIKLFVLDEADEMLS 510
DMI RRAL + +++FVLDEADEMLS
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLS 175
Score = 134 bits (325), Expect = 9e-33
Identities = 60/84 (71%), Positives = 76/84 (90%)
Frame = +2
Query: 2 DPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQS 181
+ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIM + RDV+AQAQS
Sbjct: 6 EDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQS 65
Query: 182 GTGKTATFSISILQQIDTSIRECQ 253
GTGKTATFSIS+LQ+IDTS+++CQ
Sbjct: 66 GTGKTATFSISVLQKIDTSLKQCQ 89
Score = 126 bits (305), Expect = 2e-30
Identities = 56/76 (73%), Positives = 68/76 (89%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGFKDQI+D+F++L QV+LLSATMP DVLEV+ FMRDP+RILV+K+ELTLEGIKQF
Sbjct: 176 RGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQF 235
Query: 690 YIAIELEEWKLETLCD 737
Y+A+E EEWKL+TLCD
Sbjct: 236 YVAVEKEEWKLDTLCD 251
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 125 bits (301), Expect = 8e-30
Identities = 56/87 (64%), Positives = 71/87 (81%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+LIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V DI++L+ G HVV GTPGRV
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151
Query: 433 DMITRRALHANTIKLFVLDEADEMLSE 513
DMI RR L +K+ +LDEADE+L++
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQ 178
Score = 111 bits (268), Expect = 8e-26
Identities = 52/72 (72%), Positives = 62/72 (86%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQAQSGTGKTATFSI I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79
Query: 218 LQQIDTSIRECQ 253
LQ ID S+R+ Q
Sbjct: 80 LQSIDLSVRDTQ 91
Score = 104 bits (250), Expect = 1e-23
Identities = 43/76 (56%), Positives = 64/76 (84%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
+GFK+QI+D+++ L QV+++SAT+P DVLE++ F +PVRILV+++ELTLEG+KQ+
Sbjct: 178 QGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQY 237
Query: 690 YIAIELEEWKLETLCD 737
+IA+E EEWK +TLCD
Sbjct: 238 FIAVEKEEWKFDTLCD 253
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 87.8 bits (208), Expect = 1e-18
Identities = 44/92 (47%), Positives = 58/92 (63%)
Frame = +1
Query: 235 KHS*MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 414
K S + +LIL PTRELA Q +V LG H+N K GGT +R+DI +L VH+VVG
Sbjct: 109 KKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVG 168
Query: 415 TPGRVYDMITRRALHANTIKLFVLDEADEMLS 510
TPGRV D+ + + FV+DEAD++LS
Sbjct: 169 TPGRVLDLAGKGVADFSECTTFVMDEADKLLS 200
Score = 75.4 bits (177), Expect = 8e-15
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK ELL GI+ GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 227 IDTSIRECQ 253
+DT + Q
Sbjct: 106 VDTKKSKIQ 114
Score = 28.7 bits (61), Expect = 0.91
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F I + + Q+ L SAT P V + P I + +ELTL G+ Q+Y
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYA 261
Query: 696 AIELEEWKLETL 731
++ E K+ L
Sbjct: 262 FVD-ESQKVHCL 272
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/74 (44%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQG--RDVIAQAQSGTGKTATFSI 211
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 212 SILQQIDTSIRECQ 253
++L ++D S+ + Q
Sbjct: 173 TMLSRVDASVPKPQ 186
Score = 65.7 bits (153), Expect = 7e-12
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQLESGVHVVVGTPGRV 429
++ LAP+RELA+QI VV +G + K +++ + + + +V+GTPG V
Sbjct: 187 AICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTV 241
Query: 430 YDMITRRALHANTIKLFVLDEADEMLSE 513
D++ RR L A IK+FVLDEAD ML +
Sbjct: 242 MDLMKRRQLDARDIKVFVLDEADNMLDQ 269
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
+G DQ + +L + Q++L SAT + V + + F + I ++ EEL++EGIKQ
Sbjct: 270 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL 329
Query: 690 YIAIELEEWKLETLCD 737
Y+ + EE K L +
Sbjct: 330 YMDCQSEEHKYNVLVE 345
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.1 bits (169), Expect = 7e-14
Identities = 36/85 (42%), Positives = 49/85 (57%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+++LAPTRELAQQIQ + L +C + +GG E Q+ G H+VV TPGR+
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLL 387
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D + RR + V+DEAD ML
Sbjct: 388 DCLERRLFVLSQCTYVVMDEADRML 412
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/66 (31%), Positives = 41/66 (62%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 203 FSISIL 220
F I ++
Sbjct: 303 FIIPLI 308
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3
Query: 564 QVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 686
Q I+ SAT+P V +++ ++ +PV + + ++ ++Q
Sbjct: 451 QTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQ 491
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.1 bits (154), Expect = 5e-12
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 227 ID 232
I+
Sbjct: 113 IE 114
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES---GVHVVVG 414
+S L+L TRELA QI+ +L + + GG N+++D+ + H+VV
Sbjct: 120 VSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVA 179
Query: 415 TPGRVYDMITRRALHANTIKLFVLDEADEMLSEV 516
TPGR+ ++ + L N++K FVLDE D++L V
Sbjct: 180 TPGRLNALVREKILKVNSVKHFVLDECDKLLESV 213
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +3
Query: 528 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIE 704
I +VF+ QV++ SAT+ +++ + + FM++P+ I V E +LTL G++Q Y+ +E
Sbjct: 219 IQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE 278
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 65.3 bits (152), Expect = 9e-12
Identities = 36/86 (41%), Positives = 49/86 (56%)
Frame = +1
Query: 250 SSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 429
++LILAPTREL QI + + A GG ++R IRQ++ G ++ TPGR+
Sbjct: 257 TTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRL 316
Query: 430 YDMITRRALHANTIKLFVLDEADEML 507
D+I R + IK VLDEAD ML
Sbjct: 317 VDLIDRGRISLANIKFLVLDEADRML 342
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 218 L 220
L
Sbjct: 228 L 228
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.9 bits (151), Expect = 1e-11
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+LIL PTRELA QI + ALG +LN K +GG ++ L HVVV TPGR+
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLA 137
Query: 433 DMITRRALHA----NTIKLFVLDEADEMLS 510
D+I IK V+DEAD +LS
Sbjct: 138 DLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 221 QQ 226
++
Sbjct: 67 EK 68
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 63.3 bits (147), Expect = 3e-11
Identities = 34/84 (40%), Positives = 43/84 (51%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+LAPTRELA QIQ+ G + GG IR L GV + + TPGR+ D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 436 MITRRALHANTIKLFVLDEADEML 507
M+ + + VLDEAD ML
Sbjct: 259 MLDSNKTNLRRVTYLVLDEADRML 282
Score = 46.0 bits (104), Expect = 6e-06
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 218 LQQID 232
+ I+
Sbjct: 181 IVHIN 185
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQF 689
GF+ QI + + D Q ++ SAT P +V ++R ++ D +++ V +L IKQ
Sbjct: 285 GFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQI 344
Query: 690 YIAIE 704
++
Sbjct: 345 VEVVD 349
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.9 bits (146), Expect = 5e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 221 Q 223
+
Sbjct: 74 E 74
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ--LESGVHVVVGTPGR 426
+L+L PTRELAQQ+ V+ L + TN + +++ L +V+ TP R
Sbjct: 91 ALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
+ L + +K V+DEAD MLS
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLMLS 178
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEE 662
G+ + + + + L Q L+SAT+ ++ + + R+P + V+ +E
Sbjct: 180 GYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE 229
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 61.7 bits (143), Expect = 1e-10
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ +L++APTRELA QI + + N + + GG V++ R L HVVV TPGR
Sbjct: 193 VQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGR 252
Query: 427 VYDMITRRALHAN--TIKLFVLDEADEMLSE 513
++ +I L N IK VLDEAD +L +
Sbjct: 253 LWSVINENNLTGNFKKIKCLVLDEADRLLQK 283
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 218 LQ 223
L+
Sbjct: 181 LE 182
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 61.3 bits (142), Expect = 1e-10
Identities = 25/65 (38%), Positives = 44/65 (67%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 227 IDTSI 241
+ +++
Sbjct: 131 LKSTL 135
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+LIL+P RELA Q KVV + + A +GG ++ E L +VV TPGR
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201
Query: 433 DMITRRALHANTIKLFVLDEADEM 504
+ L ++I+ V DEAD +
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRL 225
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
GF Q+ ++ L Q +L SAT+P +++ ++ ++DPV + + E ++ +
Sbjct: 229 GFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAF 288
Query: 693 IAIELEEWKLETLC 734
+++ E + LC
Sbjct: 289 FSVKTAEREAALLC 302
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 59.3 bits (137), Expect = 6e-10
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
LIL PTRELA Q V + + CIGG +++ ++L +V+ TPGR D
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 436 -MITRRALHANTIKLFVLDEADEMLSE 513
M + I++ V+DEAD ML +
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLED 420
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQ 223
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 224 QI 229
++
Sbjct: 320 RL 321
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/63 (28%), Positives = 36/63 (57%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
GF D+++++ + Q +L SATM D V ++ R + PVR+ V ++ T + + Q +
Sbjct: 421 GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEF 480
Query: 693 IAI 701
+ +
Sbjct: 481 VRV 483
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.8 bits (136), Expect = 7e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +2
Query: 17 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKT 196
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 197 ATFSISILQQI 229
A F++ ++Q++
Sbjct: 98 AAFALPVIQEL 108
Score = 56.8 bits (131), Expect = 3e-09
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+++LAPTRELA QI + A+G + + +GG ++ L HV+V TPGR+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
Query: 433 DMI-TRRALHANTIKLFVLDEADEML 507
D + + +K ++DEAD +L
Sbjct: 177 DHLENTKGFSLKNLKYLIMDEADRLL 202
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +3
Query: 528 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
I + K++ + + +L SATM V ++ R + PVR+ V + T++ + Q Y+
Sbjct: 210 IDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL 265
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.4 bits (135), Expect = 1e-09
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 420
++I+APTREL QQI V L + H C+ IGG + + ++ GV++++GTP
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTP 277
Query: 421 GRVYDMI-TRRALHANTIKLFVLDEADEML 507
GR+ D + AL + ++ VLDE D ++
Sbjct: 278 GRLADHLENTEALDVSQVRWVVLDEGDRLM 307
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 110 PSAIQQRAIMTCIQ--GRDVIAQAQSGTGKTATFSISILQQI 229
P+AIQ + + +D +AQ+G+GKT + + I+Q++
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.0 bits (129), Expect = 5e-09
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+++PTRELA Q + + +L N K GG E R ++ V++GTPGR+ D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLD 298
Query: 436 MITRRALHANTIKLFVLDEADEML 507
+I ++ + + VLDEAD ML
Sbjct: 299 LINDGSIDCSQVGYLVLDEADRML 322
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 227 ID 232
++
Sbjct: 227 LN 228
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 564 QVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 665
Q + SAT P+ V ++ F++DPV+I + +EL
Sbjct: 347 QTVFFSATWPESVRALAATFLKDPVKITIGSDEL 380
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.2 bits (127), Expect = 9e-09
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++I+ PTRELA QI + LN + GG +++ I L+ G +VV TPGR+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 433 DMITR---RALHANTIKLFVLDEADEM 504
D+++ R + + VLDEAD M
Sbjct: 554 DVLSANAGRVTNLHRCTYLVLDEADRM 580
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 203 FSISILQQI 229
F + + + I
Sbjct: 472 FLLPMFRHI 480
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
GF+ Q+ + + D Q +L SAT P + ++R ++ PV I V + ++Q
Sbjct: 584 GFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI- 642
Query: 693 IAIELEEWKLETLCD 737
+ + EE K L +
Sbjct: 643 VEVRPEESKFSRLLE 657
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
+E F D+ L E + + I GFE + IQ+R+I + GRDV+ A++G+GKT F I
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 218 LQQI 229
++ +
Sbjct: 148 IEML 151
Score = 53.2 bits (122), Expect = 4e-08
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
+I++PTRELA QI V L + + IGG N R + +L GV+++V TPGR+ D
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Query: 436 MI-TRRALHANTIKLFVLDEADEML 507
+ + ++ V+DEAD +L
Sbjct: 225 HLQNTKGFVFRNLRSLVIDEADRIL 249
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.0 bits (119), Expect = 9e-08
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ +L+++PTRELA Q + ++ +G + IGG N +E+ +L S ++++V TPGR
Sbjct: 112 LGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGR 170
Query: 427 VYDMITRRA-LHANTIKLFVLDEADEML 507
+ I + + +++ +LDEAD +L
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRIL 198
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/66 (24%), Positives = 38/66 (57%)
Frame = +2
Query: 32 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
+ V+ F ++ L + + F + IQ++ I + ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 212 SILQQI 229
+++ +
Sbjct: 96 PLIENL 101
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL--TLEGIKQ 686
GF+ + + L Q +L SAT V +++R +++P I V + + T + Q
Sbjct: 201 GFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQ 260
Query: 687 FYIAIELEEWKLETL 731
FY+ + L E KL+ L
Sbjct: 261 FYLTVPLTE-KLDIL 274
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.2 bits (112), Expect = 6e-07
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +1
Query: 229 RYKHS*MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHV 405
R S + S+IL+PTRELA QI + L + IGG + +RE+ ++
Sbjct: 107 RLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANL 166
Query: 406 VVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 507
++ TPGR+ D + R L + + F+LDEAD ++
Sbjct: 167 LIATPGRLEDHLQNPRILESLSTDSFILDEADRLM 201
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 GFEKPSAIQQRAIMTCIQGRD-VIAQAQSGTGKTATFSISILQQI 229
GFEK + +QQR + + + QA++GTGKT F + + +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV 101
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.6 bits (98), Expect = 3e-05
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTNVREDIRQLESG 396
+ +LI+APTRELA QI V L G L A + GT + E
Sbjct: 73 LGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKN 132
Query: 397 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 507
VV+GTPGR+ +M++ + + +++ +LDEAD ++
Sbjct: 133 PSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQ 223
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 224 QI 229
++
Sbjct: 62 KV 63
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.1 bits (92), Expect = 2e-04
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL-----ESGVHVVVGTP 420
+++ PTREL Q+ K + A G ++R + QL E + V+V TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 421 GRVYDMITR-RALHANTIKLFVLDEADEMLSE 513
GR+ D I + ++ V+DEAD +L +
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQ 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGVHVVVGTPGRV 429
++I+APTREL +QI + L + K ++E +L + +GTP R+
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 430 YDMITRRALHANTIKLFVLDEADEM 504
I + L ++ FV+DEAD +
Sbjct: 178 VQAI-QTGLSFEKVEFFVMDEADRL 201
Score = 33.5 bits (73), Expect = 0.032
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 513 GFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
GF +Q H + S+++ L SAT+P V E+++ DP+RI+V ++ + I Q
Sbjct: 205 GFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQR 264
Query: 690 YIAIELEEWKLETL 731
+ + + K+ L
Sbjct: 265 LLFVGSDTSKIVIL 278
Score = 32.7 bits (71), Expect = 0.056
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 113 SAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI 241
+ IQ+ AI T RD++A A +G+GKT + ILQ++ +
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV 112
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 337 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 504
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.69
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 62 LKEELLRGIY-AYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQI 229
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 11 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 103
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 624 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 716
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 292 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 468
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 469 IK 474
I+
Sbjct: 188 IQ 189
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 327 QVITKSYHHLLNLLGQLSCGSQDQ 256
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 14 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRD 160
LDT+W V + NL+ + + I + F PS I + M + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 259 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 417
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 387 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 286
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,479
Number of Sequences: 5004
Number of extensions: 71588
Number of successful extensions: 293
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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