Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30452
(738 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 63 2e-12
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 24 1.3
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.3
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 23 2.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.2
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 22 6.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.1
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 9.1
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 63.3 bits (147), Expect = 2e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
+I++PTREL QI + ++ + K GGT+V +L +G H++V TPGR+ D
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLD 336
Query: 436 MITRRALHANTIKLFVLDEADEML 507
+ + + ++++ VLDEAD ML
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRML 360
Score = 56.0 bits (129), Expect = 3e-10
Identities = 24/66 (36%), Positives = 44/66 (66%)
Frame = +2
Query: 32 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
Q +E+F+ L+ +L I G++KP+ +Q+ A+ + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252
Query: 212 SILQQI 229
I+ +
Sbjct: 253 PIINTL 258
Score = 25.0 bits (52), Expect = 0.74
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 564 QVILLSATMPDDVLEVSRCFMRD 632
Q ++ SAT PD+V ++R F+ +
Sbjct: 384 QTLMFSATFPDEVQHLARRFLNN 406
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 577 SLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNF 690
+++ C M + + I Y ++ R LPW NN+
Sbjct: 67 AVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 177 SQELEKLLLSLYRFYNKSIQAFVNV 251
S++ E+L+ L+R YNK I+ N+
Sbjct: 24 SEDEERLVRDLFRGYNKLIRPVQNM 48
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.4 bits (48), Expect = 2.3
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -3
Query: 451 HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 272
++EL++ + CPPP S G G C + H +E PS+ +
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748
Query: 271 WEPGS 257
PG+
Sbjct: 1749 PHPGN 1753
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 23.4 bits (48), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 367 GHWCHQCKHGI*HSS 323
G CH+CK+GI SS
Sbjct: 40 GDSCHKCKYGIAMSS 54
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 3.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -3
Query: 457 EAHDELSYHIHDLECPPPHEHHSP 386
+ H L H H L+ +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.2
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 345 LHWWHQCP 368
LH WH CP
Sbjct: 470 LHHWHHCP 477
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 21.8 bits (44), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 HFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 412
H I+ I +K F GVG+ S+ I+ W++
Sbjct: 126 HLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 9.1
Identities = 10/30 (33%), Positives = 10/30 (33%)
Frame = -3
Query: 451 HDELSYHIHDLECPPPHEHHSPVGEYLHGH 362
H H H PH HHS H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQH 444
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.4 bits (43), Expect = 9.1
Identities = 7/18 (38%), Positives = 8/18 (44%)
Frame = -3
Query: 412 PPPHEHHSPVGEYLHGHW 359
PP H HH H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,327
Number of Sequences: 438
Number of extensions: 5338
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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