Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30452
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 134 4e-32
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 132 2e-31
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 130 1e-30
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 118 3e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 114 5e-26
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 81 1e-15
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 78 7e-15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 77 2e-14
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 77 2e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 73 2e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 73 2e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 73 3e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 73 3e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 73 3e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 73 3e-13
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 72 5e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 71 1e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 71 1e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 71 1e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 71 1e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 70 1e-12
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 70 2e-12
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 69 2e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 68 6e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 68 6e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 67 1e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 67 1e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 67 1e-11
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 66 2e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 66 3e-11
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 66 3e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 64 1e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 63 2e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 63 2e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 62 4e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 62 4e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 62 5e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 61 7e-10
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 60 1e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 60 2e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 59 3e-09
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 58 5e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 58 8e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 57 1e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 57 1e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 57 1e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 2e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 56 3e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 55 4e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 53 2e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 51 9e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 6e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 2e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 2e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 44 8e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 44 1e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 43 2e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.26
At2g28600.1 68415.m03476 expressed protein 32 0.46
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 30 1.8
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 4.3
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 28 5.6
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 28 5.6
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 5.6
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.4
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 28 7.4
At2g43110.1 68415.m05352 expressed protein 28 7.4
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 27 9.8
At1g12030.1 68414.m01389 expressed protein contains Pfam profile... 27 9.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 134 bits (325), Expect = 4e-32
Identities = 62/86 (72%), Positives = 77/86 (89%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+L+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED R L++GVHVVVGTPGRV+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 433 DMITRRALHANTIKLFVLDEADEMLS 510
DM+ R++L A+ IK+FVLDEADEMLS
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLS 195
Score = 113 bits (272), Expect = 1e-25
Identities = 50/76 (65%), Positives = 64/76 (84%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGFKDQI+D+F++L +QV + SATMP + LE++R FM PVRILV+++ELTLEGIKQF
Sbjct: 196 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF 255
Query: 690 YIAIELEEWKLETLCD 737
Y+ +E EEWKLETLCD
Sbjct: 256 YVNVEKEEWKLETLCD 271
Score = 108 bits (260), Expect = 3e-24
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = +2
Query: 20 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTA 199
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+ +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 200 TFSISILQQIDTSIRECQ 253
TF +LQQ+D S+ +CQ
Sbjct: 92 TFCSGVLQQLDFSLIQCQ 109
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 132 bits (319), Expect = 2e-31
Identities = 61/86 (70%), Positives = 76/86 (88%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+L+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VRED R L+SGVHVVVGTPGRV+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 433 DMITRRALHANTIKLFVLDEADEMLS 510
D++ R++L A+ IK+FVLDEADEMLS
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLS 197
Score = 113 bits (273), Expect = 9e-26
Identities = 50/76 (65%), Positives = 65/76 (85%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGFKDQI+D+F++L + VQV + SATMP + LE++R FM PVRILV+++ELTLEGIKQF
Sbjct: 198 RGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 257
Query: 690 YIAIELEEWKLETLCD 737
Y+ ++ EEWKLETLCD
Sbjct: 258 YVNVDKEEWKLETLCD 273
Score = 109 bits (261), Expect = 2e-24
Identities = 51/81 (62%), Positives = 64/81 (79%)
Frame = +2
Query: 11 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTG 190
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+ +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 191 KTATFSISILQQIDTSIRECQ 253
KTATF +LQQ+D S+ +CQ
Sbjct: 91 KTATFCSGVLQQLDISLVQCQ 111
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 130 bits (313), Expect = 1e-30
Identities = 60/86 (69%), Positives = 75/86 (87%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+L+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED R L++GVHVVVGTPGRV+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 433 DMITRRALHANTIKLFVLDEADEMLS 510
DM+ R++L + IK+FVLDEADEMLS
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLS 195
Score = 112 bits (269), Expect = 3e-25
Identities = 49/76 (64%), Positives = 64/76 (84%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGFKDQI+D+F++L +QV + SATMP + LE++R FM PVRILV+++ELTLEGIKQF
Sbjct: 196 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF 255
Query: 690 YIAIELEEWKLETLCD 737
Y+ +E E+WKLETLCD
Sbjct: 256 YVNVEKEDWKLETLCD 271
Score = 108 bits (260), Expect = 3e-24
Identities = 51/78 (65%), Positives = 62/78 (79%)
Frame = +2
Query: 20 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTA 199
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+ +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 200 TFSISILQQIDTSIRECQ 253
TF +LQQ+D ++ +CQ
Sbjct: 92 TFCSGVLQQLDYALLQCQ 109
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 118 bits (285), Expect = 3e-27
Identities = 56/88 (63%), Positives = 68/88 (77%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ +LIL+PTRELA Q +K + A+G H N + HACIGG +V EDIR+LE GVHVV GTPGR
Sbjct: 104 VQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGR 163
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
V DMI RR+L IKL +LDE+DEMLS
Sbjct: 164 VCDMIKRRSLRTRAIKLLILDESDEMLS 191
Score = 111 bits (267), Expect = 5e-25
Identities = 47/76 (61%), Positives = 66/76 (86%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGFKDQI+DV++ L D+QV L+SAT+P ++LE++ FM +PV+ILV+++ELTLEGIKQF
Sbjct: 192 RGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQF 251
Query: 690 YIAIELEEWKLETLCD 737
++A+E EEWK +TLCD
Sbjct: 252 FVAVEKEEWKFDTLCD 267
Score = 109 bits (262), Expect = 2e-24
Identities = 49/78 (62%), Positives = 64/78 (82%)
Frame = +2
Query: 20 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTA 199
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+M +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 200 TFSISILQQIDTSIRECQ 253
++S+ Q +DTS RE Q
Sbjct: 88 MIALSVCQVVDTSSREVQ 105
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 114 bits (275), Expect = 5e-26
Identities = 51/86 (59%), Positives = 66/86 (76%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++LE GVH V GTPGRVYD
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 436 MITRRALHANTIKLFVLDEADEMLSE 513
MI R +L +KL VLDE+DEMLS+
Sbjct: 154 MIKRGSLQTKAVKLLVLDESDEMLSK 179
Score = 107 bits (258), Expect = 6e-24
Identities = 45/76 (59%), Positives = 63/76 (82%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
+G KDQI+DV++ L D+QV L+SAT+P ++LE++ FM DPVRILV+ +ELTLEGIKQ+
Sbjct: 179 KGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQY 238
Query: 690 YIAIELEEWKLETLCD 737
Y+ ++ EEWK +TLCD
Sbjct: 239 YVDVDKEEWKFDTLCD 254
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/73 (54%), Positives = 60/73 (82%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
+++FDDM + +++LRG+Y YG++KPS IQQRA++ ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 218 LQQIDTSIRECQV 256
Q ++ S R+ QV
Sbjct: 81 CQIVNISSRKVQV 93
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+LAPTRELA+Q++K L+ C GGT + + +RQL+ GV V VGTPGRV D
Sbjct: 182 LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ R AL+ + ++ VLDEAD+ML
Sbjct: 240 LMKRGALNLSEVQFVVLDEADQML 263
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/59 (33%), Positives = 38/59 (64%)
Frame = +2
Query: 53 DMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQI 229
++ + E+++ + + G EK IQ+ + ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP--VRILVQKEELTLEGIKQ 686
GF + + + + L Q ++ SATMP + +++ ++ +P V ++ ++ +GI
Sbjct: 266 GFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITT 325
Query: 687 FYI 695
+ I
Sbjct: 326 YSI 328
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+LAPTRELA+Q++K L+ C GGT + + +R+L G+ V VGTPGR+ D
Sbjct: 194 LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ R AL+ + ++ VLDEAD+ML
Sbjct: 252 LMKRGALNLSEVQFVVLDEADQML 275
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +2
Query: 53 DMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQI 229
D+ + E+++ + G EK IQ+ + ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI-LV-QKEELTLEGIKQ 686
GF + + + + L A Q ++ SATMP + +++ ++ +P+ I LV ++ +GI
Sbjct: 278 GFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITM 337
Query: 687 FYIAIE 704
+ IA +
Sbjct: 338 YSIAAD 343
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 227 ID 232
ID
Sbjct: 193 ID 194
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ ++I+ PTRELA Q +V LG HL + GGT++++DI +L VH++VGTPGR
Sbjct: 200 IQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGR 259
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLSE 513
+ D+ + + V+DEAD++LS+
Sbjct: 260 ILDLTKKGVCVLKDCSVLVMDEADKLLSQ 288
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F+ + + L Q+++ SAT P V + F+ +P I + +ELTL+GI QFY
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYA 348
Query: 696 AIELEEWKLETL 731
+E E K+ L
Sbjct: 349 FVE-ERQKIHCL 359
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 227 ID 232
ID
Sbjct: 193 ID 194
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ ++I+ PTRELA Q +V LG HL + GGT++++DI +L VH++VGTPGR
Sbjct: 200 IQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGR 259
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLSE 513
+ D+ + + V+DEAD++LS+
Sbjct: 260 ILDLTKKGVCVLKDCSVLVMDEADKLLSQ 288
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F+ + + L Q+++ SAT P V + F+ +P I + +ELTL+GI QFY
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYA 348
Query: 696 AIELEEWKLETL 731
+E E K+ L
Sbjct: 349 FVE-ERQKIHCL 359
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ ++IL PTRELA Q +V L +LN + GGT++R+DI +L VH++VGTPGR
Sbjct: 193 IQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGR 252
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
+ D+ + + V+DEAD++LS
Sbjct: 253 ILDLTKKGVCVLKDCAMLVMDEADKLLS 280
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 227 ID 232
ID
Sbjct: 186 ID 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F+ + ++ + L + Q ++ SAT P V +R P I + ++LTL G+ Q+Y
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYA 341
Query: 696 AIELEEWKLETL 731
+E E K+ L
Sbjct: 342 FVE-ERQKVHCL 352
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ ++IL PTRELA Q +V L +LN + GGT++R+DI +L VH++VGTPGR
Sbjct: 193 IQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGR 252
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
+ D+ + + V+DEAD++LS
Sbjct: 253 ILDLTKKGVCVLKDCAMLVMDEADKLLS 280
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 227 ID 232
ID
Sbjct: 186 ID 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F+ + ++ + L + Q ++ SAT P V +R P I + ++LTL G+ Q+Y
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYA 341
Query: 696 AIELEEWKLETL 731
+E E K+ L
Sbjct: 342 FVE-ERQKVHCL 352
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 227 ID 232
ID
Sbjct: 216 ID 217
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/88 (39%), Positives = 54/88 (61%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ ++IL PTRELA Q +V L +L + GGT++R+DI +L VH++VGTPGR
Sbjct: 223 IQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGR 282
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
+ D+ + + V+DEAD++LS
Sbjct: 283 ILDLAKKGVCVLKDCAMLVMDEADKLLS 310
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 695
F+ I ++ + L Q+++ SAT P V +++ P I+ ++LTL G+ Q+Y
Sbjct: 313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYA 371
Query: 696 AIELEEWKLETL 731
+E E K+ L
Sbjct: 372 FVE-ERQKVHCL 382
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/85 (44%), Positives = 53/85 (62%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+LAPTRELA+Q++K + +L+ C GG + L GV VVVGTPGR+ D
Sbjct: 184 LVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID 241
Query: 436 MITRRALHANTIKLFVLDEADEMLS 510
+I R+L ++ VLDEAD+ML+
Sbjct: 242 LIEGRSLKLGEVEYLVLDEADQMLA 266
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 56 MNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQI 229
++L + L + G IQ+ ++ +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI-LV-QKEELTLEGIKQ 686
GF++ + + + L Q +L SATMP V +++R ++ +P+ I LV ++E EGIK
Sbjct: 268 GFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL 327
Query: 687 FYIA 698
+ IA
Sbjct: 328 YAIA 331
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
LILAPTRELA QIQ + G C GG +++LE G +VV TPGR+ D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ + + + L VLDEAD ML
Sbjct: 571 ILEMKMIDFQQVSLLVLDEADRML 594
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLI 491
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK-EELTLEGIKQF 689
GF+ QI + + Q ++ +AT P +V +++ + +PV++ + + +EL
Sbjct: 597 GFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQ 656
Query: 690 YIAI 701
Y+ +
Sbjct: 657 YVEV 660
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ R + I VLDEAD ML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ R + I VLDEAD ML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ R + I VLDEAD ML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+GTPGR+ D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 436 MITRRALHANTIKLFVLDEADEML 507
+I L + + VLDEAD ML
Sbjct: 255 LIESNVLRLSDVSFVVLDEADRML 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
++TF + NL E +L FEKPS IQ + GRD+I A++G+GKT F I
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 218 LQQI 229
+ +
Sbjct: 173 IMHV 176
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM-RDPVRILVQKEEL 665
GF++ + + + Q+++ SAT P DV ++++ FM +P+++++ +L
Sbjct: 281 GFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDL 332
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR+ D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 436 MITRRALHANTIKLFVLDEADEML 507
++ + + + + VLDEAD ML
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRML 388
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +2
Query: 80 RGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSI 211
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+++LAPTREL Q++ LG L K +GG + + +++ GV +++GTPGRV
Sbjct: 189 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVV 248
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++++ + + I FVLDE D ML
Sbjct: 249 DLLSKHTIELDNIMTFVLDEVDCML 273
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 218 LQQIDT 235
+ + T
Sbjct: 169 ISRCTT 174
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGF+DQ+ +F+ LS QV+L SAT+ +V +V ++ + + + + + Q
Sbjct: 275 RGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQL 333
Query: 690 YIAIELEEWK 719
I ++ ++ K
Sbjct: 334 AIWVDAKQKK 343
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+++LAPTREL Q++ LG L K +GG + + +++ GV +++GTPGRV
Sbjct: 52 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVV 111
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++++ + + I FVLDE D ML
Sbjct: 112 DLLSKHTIELDNIMTFVLDEVDCML 136
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +3
Query: 510 RGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 689
RGF+DQ+ +F+ LS QV+L SAT+ +V +V ++ + + + + + Q
Sbjct: 138 RGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQL 196
Query: 690 YIAIELEEWK 719
I ++ ++ K
Sbjct: 197 AIWVDAKQKK 206
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 128 RAIMTCIQGRDVIAQAQSGTGKTATFSISILQQIDT 235
+AI + G+ ++A A +G+GKTA+F + I+ + T
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTT 37
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/85 (40%), Positives = 48/85 (56%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++IL+PTRELA QI K GGT + + +R+LE GV ++V TPGR+
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLN 299
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++ R + I+ LDEAD ML
Sbjct: 300 DLLERARVSMQMIRFLALDEADRML 324
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Frame = +2
Query: 14 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSG 184
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 185 TGKTATFSISILQQI 229
+GKTA F I+ I
Sbjct: 207 SGKTAAFCFPIISGI 221
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/85 (36%), Positives = 51/85 (60%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++++APTRELAQQI++ + +L + + +GG ++ E ++ G +V+ TPGR+
Sbjct: 392 AVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLI 451
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D + RR N VLDEAD M+
Sbjct: 452 DCLERRYAVLNQCNYVVLDEADRMI 476
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/64 (40%), Positives = 41/64 (64%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 218 LQQI 229
L I
Sbjct: 372 LAYI 375
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 573 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEE--WKLETLCD 737
+ SATMP V ++R ++R+PV + + T + I Q I ++ E ++L+ L D
Sbjct: 516 MFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLD 572
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/85 (41%), Positives = 48/85 (56%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++IL+PTRELA QI K GGT V + IR+LE GV ++V TPGR+
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLN 286
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++ R + ++ LDEAD ML
Sbjct: 287 DLLERGRVSLQMVRFLALDEADRML 311
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 14 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSG 184
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 185 TGKTATFSISILQQI 229
+GKTA F I+ I
Sbjct: 194 SGKTAAFCFPIISGI 208
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L+LAPTRELA QIQ+ G K GG +R L+ GV +V+ TPGR+ D
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 436 MITRRALHANTIKLFVLDEADEML 507
M+ + + VLDEAD ML
Sbjct: 236 MMESNNTNLRRVTYLVLDEADRML 259
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/70 (27%), Positives = 41/70 (58%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 203 FSISILQQID 232
+ + + ++
Sbjct: 153 YLLPAIVHVN 162
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/64 (56%), Positives = 40/64 (62%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 227 IDTS 238
I+ S
Sbjct: 108 IEPS 111
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESGVHVVVGT 417
+S+L+L TRELA QI + +L + K GG N++ +D+ + E H+VVGT
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP-HIVVGT 173
Query: 418 PGRVYDMITRRALHANTIKLFVLDEADEMLSEV 516
PGRV + + L ++ F+LDE D+ML +
Sbjct: 174 PGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +3
Query: 528 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAI- 701
+ ++FKM D QV++ SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI +
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
Query: 702 ELEE-WKLETLCD 737
E+E+ KL L D
Sbjct: 272 EMEKNRKLNDLLD 284
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/64 (56%), Positives = 40/64 (62%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 227 IDTS 238
I+ S
Sbjct: 108 IEPS 111
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESGVHVVVGT 417
+S+L+L TRELA QI + +L + K GG N++ +D+ + E H+VVGT
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP-HIVVGT 173
Query: 418 PGRVYDMITRRALHANTIKLFVLDEADEMLSEV 516
PGRV + + L ++ F+LDE D+ML +
Sbjct: 174 PGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +3
Query: 528 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAI- 701
+ ++FKM D QV++ SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI +
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271
Query: 702 ELEEW-KLETLCD 737
E+E+ KL L D
Sbjct: 272 EMEKTRKLNDLLD 284
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/86 (44%), Positives = 50/86 (58%)
Frame = +1
Query: 250 SSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 429
S L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTPGR+
Sbjct: 176 SVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRI 235
Query: 430 YDMITRRALHANTIKLFVLDEADEML 507
D I R+ L + ++ VLDEADEML
Sbjct: 236 KDHIERQNLDFSYLQFRVLDEADEML 261
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++ R + I+ LDEAD ML
Sbjct: 292 DLLERARVSMQMIRFLALDEADRML 316
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 218 LQQI 229
+ I
Sbjct: 210 ISGI 213
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 433 DMITRRALHANTIKLFVLDEADEML 507
D++ R + I+ LDEAD ML
Sbjct: 292 DLLERARVSMQMIRFLALDEADRML 316
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 218 LQQI 229
+ I
Sbjct: 210 ISGI 213
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD- 435
+L+PTRELA QI + ALG ++ +C +GG + + L HV+V TPGR++D
Sbjct: 94 VLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 436 MITRRALHANTIKLFVLDEADEMLSE 513
M + ++K VLDEAD +L+E
Sbjct: 154 MSDTKGFSLKSLKYLVLDEADRLLNE 179
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/67 (41%), Positives = 47/67 (70%)
Frame = +2
Query: 29 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFS 208
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 209 ISILQQI 229
I ILQ +
Sbjct: 65 IPILQAL 71
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
F+ ++ + + + + + L SATM V ++ R +R+PV+I + T++ +KQ Y
Sbjct: 181 FEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY 239
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/84 (42%), Positives = 45/84 (53%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
LILAPTRELA QIQ+ G + GG IR L GV +V+ TPGR+ D
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 436 MITRRALHANTIKLFVLDEADEML 507
M+ + + + VLDEAD ML
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRML 325
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 203 FSISILQQIDTSIR 244
+ + L + R
Sbjct: 219 YLLPALVHVSAQPR 232
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 665
GF+ QI + + D Q +L SAT P +V ++R F+RDP + ++ +L
Sbjct: 328 GFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDL 378
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/84 (42%), Positives = 45/84 (53%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
LILAPTRELA QIQ+ G + GG IR L GV +V+ TPGR+ D
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 436 MITRRALHANTIKLFVLDEADEML 507
M+ + + + VLDEAD ML
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRML 325
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 203 FSISILQQIDTSIR 244
+ + L + R
Sbjct: 219 YLLPALVHVSAQPR 232
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 665
GF+ QI + + D Q +L SAT P +V ++R F+RDP + ++ +L
Sbjct: 328 GFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDL 378
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Frame = +1
Query: 253 SLILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLESGVHVVVG 414
+L++ P+RELA+Q +++ V +L + + + CIGG ++R + ++ GVH+VV
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVA 235
Query: 415 TPGRVYDMITRRALHANTIKLFVLDEADEML 507
TPGR+ D++ ++ + + +L LDEAD ++
Sbjct: 236 TPGRLKDILAKKKMSLDACRLLTLDEADRLV 266
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 218 L 220
+
Sbjct: 156 I 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 650
GF+D I VF + Q +L SATMP + + + PV + V
Sbjct: 269 GFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNV 314
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVV------IALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 417
LI+ P+RELA+Q +VV + + + CIGG ++R + ++ GVH+VV T
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 418 PGRVYDMITRRALHANTIKLFVLDEADEML 507
PGR+ DM+ ++ + + + LDEAD ++
Sbjct: 286 PGRLKDMLAKKKMSLDACRYLTLDEADRLV 315
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 218 L 220
+
Sbjct: 205 I 205
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 650
GF+D I +VF + Q +L SATMP + +R + PV + V
Sbjct: 318 GFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNV 363
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
LIL PTRELA QI ++ L + KC +GG +VRE L S +VV TPGR+ D
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 436 MI-TRRALHANTIKLFVLDEADEML 507
+ ++ + + + +LDEAD +L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLL 326
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 221 QQI 229
+++
Sbjct: 227 ERL 229
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 644
GF +I ++ ++ Q +L SATM ++V E+ + + P+R+
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL 372
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/83 (39%), Positives = 44/83 (53%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
+I APTRELA QI + A GG + E ++L++G +VV TPGR+ D
Sbjct: 305 VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLID 364
Query: 436 MITRRALHANTIKLFVLDEADEM 504
M+ +AL VLDEAD M
Sbjct: 365 MLKMKALTMMRASYLVLDEADRM 387
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 203 FSISILQQI 229
F + ++ I
Sbjct: 282 FVLPMIVHI 290
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
GF+ Q+ + + D Q +L SATMP V +++R + DP+R+ V + + E I Q
Sbjct: 391 GFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVV 450
Query: 693 IAIELEEWKLETLCD 737
I + KL L +
Sbjct: 451 NVIPSDAEKLPWLLE 465
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L++APTREL QQI + L +C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 665
Query: 436 MI---TRRALHANTIKLFVLDEADEM 504
++ + + + + V+DEAD M
Sbjct: 666 ILCTSSGKITNLRRVTFLVMDEADRM 691
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 203 FSISILQQI 229
F + +L+ I
Sbjct: 583 FVLPMLRHI 591
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 686
GF+ QI + + + + Q +L SAT P V ++R + PV I V + + I Q
Sbjct: 695 GFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ 752
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Frame = +1
Query: 202 FLYIDSTTNRY--KHS*MSSLILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVRE 372
F+ I +N Y K + +I++PTREL+ QI KV L N +GG V
Sbjct: 74 FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEA 133
Query: 373 DIRQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 507
D+ LE G ++++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 134 DMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL 180
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 62 LKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 238
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 81
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
+++ PTRELA Q + V L H + IGG N R + +++ SG ++V+ TPGR+ D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Query: 436 MI-TRRALHANTIKLFVLDEADEMLSE 513
+ +A +K V+DEAD +L E
Sbjct: 225 HLQNTKAFIYKHLKCLVIDEADRILEE 251
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +2
Query: 44 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQ 223
TFD ++L E+ I GF+ + IQ +I ++G+DV+ A++G+GKT F I ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/67 (35%), Positives = 47/67 (70%)
Frame = +2
Query: 29 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFS 208
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 209 ISILQQI 229
+ +LQ++
Sbjct: 102 LPLLQKL 108
Score = 35.5 bits (78), Expect = 0.037
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +1
Query: 250 SSLILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTNVREDIRQLESGV-HVVVGTPG 423
S+ IL P+REL QQ+ V +L + + A + + D+R +G+ ++V TP
Sbjct: 122 SAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPA 181
Query: 424 RVYDMITRRALH----ANTIKLFVLDEADEMLS 510
+ L + ++ + VLDEAD +LS
Sbjct: 182 CIPKCFAAGVLEPTAVSESLSILVLDEADLLLS 214
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+++L PTREL++Q+ +V ++ H + GG+ +R L + + +VVGTPGR+
Sbjct: 192 TVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRIL 251
Query: 433 DMITRRALHANTIKLFVLDEADEM 504
I + I VLDEAD M
Sbjct: 252 QHIEEGNMVYGDIAYLVLDEADTM 275
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVR--EDIRQLESGVHVVVGT 417
+S+L+L TRELA QI + +L + K GG N++ +D+ + E H+VVGT
Sbjct: 32 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECP-HIVVGT 90
Query: 418 PGRVYDMITRRALHANTIKLFVLDEADEMLSEV 516
PGRV + + L ++ F+LDE D+ML +
Sbjct: 91 PGRVLALAREKDLSLKNVRHFILDECDKMLESL 123
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +3
Query: 528 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAI- 701
+ ++FKM D QV++ SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI +
Sbjct: 129 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 188
Query: 702 ELEEW-KLETLCD 737
E+E+ KL L D
Sbjct: 189 EMEKTRKLNDLLD 201
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +2
Query: 158 DVIAQAQSGTGKTATFSISILQQIDTS 238
DVI QA+SG GKTA F +S LQQI+ S
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPS 28
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L++APTREL QQI + L C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 532
Query: 436 MI---TRRALHANTIKLFVLDEADEM 504
++ + + + + V+DEAD M
Sbjct: 533 ILCTSSGKITNLRRVTYLVMDEADRM 558
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 23 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTAT 202
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 203 FSISILQQI 229
F + +L+ I
Sbjct: 450 FVLPMLRHI 458
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 686
GF+ QI + + + D Q +L SAT P V ++R + PV I V + + I Q
Sbjct: 562 GFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ 619
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.4 bits (135), Expect = 5e-09
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+L++ PTRELA Q+ + ALG LN +C +GG ++ L S H+V+ TPGR+
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 433 DMITRR----ALHANTIKLFVLDEADEML 507
++ + + T K VLDEAD +L
Sbjct: 189 VLLENNPDVPPVFSRT-KFLVLDEADRVL 216
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 227 I 229
+
Sbjct: 120 L 120
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDV 602
GF+D++ +F+ L Q +L SATM ++
Sbjct: 219 GFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRV 429
+I++PTREL+ QI V L N +GG V+ D++ +E G +V++GTPGR+
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 430 YDMITR-RALHANTIKLFVLDEADEML 507
D++ R L +++ +LDEAD +L
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLL 180
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 653
GF+ Q++ + L + L SAT + V E+++ +R+PVR+ V+
Sbjct: 183 GFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVR 229
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 47 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 221 Q 223
+
Sbjct: 76 E 76
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMTCIQG--RDVIAQAQSGTGKTATFSISI 217
F+D+NL EL++G+Y FEKPS IQ ++ + + +IAQA +G+GKT F + +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152
Query: 218 LQQIDTSIRECQV*SWLPQESWPNK 292
L ++D ++RE Q P N+
Sbjct: 153 LSRVDPTLREPQALCICPTRELANQ 177
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN--VREDIRQLESGVHVVVGTPGR 426
+L + PTRELA Q +V+ +G + + R HVV+GTPG
Sbjct: 165 ALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGT 224
Query: 427 VYDMITRRALHANTIKLFVLDEADEMLS 510
+ + + L N +K+ V DEAD ML+
Sbjct: 225 LKKWMAFKRLGLNHLKILVFDEADHMLA 252
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +3
Query: 513 GFKDQIHDVFK---MLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIK 683
GF+D + K ++ + QV+L SAT + V + ++DP ++ V++E+L L+ +K
Sbjct: 255 GFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVK 314
Query: 684 QFYIAIELEEWKLETLCD 737
Q+ + E+ K+E + D
Sbjct: 315 QYKVVCPKEQNKIEVIKD 332
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGR 426
+ +LI+ PTRELA Q+ + + +L+ K +GG + R+L+ +VV TPGR
Sbjct: 280 LRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGR 339
Query: 427 VYDMIT---RRALHANTIKLFVLDEADEML 507
++++++ + + +++ FVLDEAD M+
Sbjct: 340 LWELMSAGEKHLVELHSLSFFVLDEADRMV 369
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MTCIQGRDVIAQAQSGTGKTATFSISILQ 223
+ M L L++ IY F++P+ IQ+ + QG+DVI A++G+GKT F + ILQ
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQ 251
Query: 224 QI 229
++
Sbjct: 252 RL 253
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
+LIL+PTR+LA+Q K LG + + +GG ++ + +L G V++ TPGR+
Sbjct: 101 ALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLM 160
Query: 433 DMITR-RALHANTIKLFVLDEADEM 504
+++ + T++ V DEAD +
Sbjct: 161 HLLSEVDDMTLRTVEYVVFDEADSL 185
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 227 I 229
+
Sbjct: 90 L 90
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 692
GF +Q+H + LS + Q +L SAT+P + E ++ +R+P + + E +K +
Sbjct: 189 GFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSF 248
Query: 693 IAIELEE 713
+ + EE
Sbjct: 249 LTVRPEE 255
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Frame = +1
Query: 235 KHS*MSSLILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN-VREDIRQLESGVHVV 408
K + + ++I+AP+REL QI ++V LG +GG N +R++ ++ +V
Sbjct: 188 KRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIV 247
Query: 409 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 510
VGTPGR+ ++ LH + + VLDE DE+LS
Sbjct: 248 VGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLS 281
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 221 QQI 229
+I
Sbjct: 170 SEI 172
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 555 ADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELT 668
A+ Q IL+SAT+P V+ ++ + +PV LVQ ++T
Sbjct: 311 ANRQTILVSATVPFSVIRAAKSWSHEPV--LVQANKVT 346
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 55.6 bits (128), Expect = 3e-08
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Frame = +1
Query: 202 FLYIDSTTNRY--KHS*MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 375
F+ I +N Y K + +I++PTREL+ QI KV A+ AKC N E
Sbjct: 75 FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-AKCREVEADMNTLE- 132
Query: 376 IRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 507
E G ++++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 133 ----EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL 173
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 62 LKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 238
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 82
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 55.2 bits (127), Expect = 4e-08
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRV 429
LIL PTRELA QI A L +H IGGT R D ++LES +++ TPGR+
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 430 YDMITRRA---LHANTIKLFVLDEADEML 507
D I ++ +KLF++DEAD +L
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLL 544
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 227 I 229
+
Sbjct: 437 V 437
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 629
GFK + + L Q +L SAT+P +V VS+ ++
Sbjct: 547 GFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 585
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Frame = +1
Query: 253 SLILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTP 420
+LIL PTRELA QI K ++ D + + IGGT + D ++LES +++ TP
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLESEPCQILIATP 465
Query: 421 GRVYDMITRRA---LHANTIKLFVLDEADEML 507
GR+ D I ++ +KLF++DEAD +L
Sbjct: 466 GRLLDHIENKSGLTSRLMALKLFIVDEADLLL 497
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 227 I 229
+
Sbjct: 390 V 390
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 629
GF+ + + L Q +L SAT+P +V VS+ ++
Sbjct: 500 GFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.8 bits (116), Expect = 9e-07
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Frame = +1
Query: 235 KHS*MSSLILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE-SGVHVV 408
+H + L++ PTRELA Q + I L H + IGGT + + R+L+ S ++
Sbjct: 153 RHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQIL 212
Query: 409 VGTPGRVYDMITRRALHANT---IKLFVLDEADEML 507
V TPGR+ D I + A +K+ VLDEAD +L
Sbjct: 213 VATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLL 248
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 227 I 229
+
Sbjct: 142 V 142
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
L++ PTRELA Q V L + + IGG + + L GV+++V TPGR+ D
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD 289
Query: 436 MI-TRRALHANTIKLFVLDEADEMLSE 513
+ +K V+DEAD +L +
Sbjct: 290 HLENTNGFIFKNLKFLVMDEADRILEQ 316
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
+TF+ ++L + + I GF + + IQ +AI + G DV+ A++G+GKT F I +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 221 Q 223
+
Sbjct: 214 E 214
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD L L+ I GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 227 I 229
+
Sbjct: 444 V 444
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 LILAPTRELAQQIQ-KVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGRV 429
L++ PTRELA Q + L H + IGGT + + R++++ ++V TPGR+
Sbjct: 462 LVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Query: 430 YDMITRRALHANT---IKLFVLDEADEML 507
D I + A +K+ VLDEAD +L
Sbjct: 522 KDHIENTSGFATRLMGVKVLVLDEADHLL 550
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +1
Query: 253 SLILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGR 426
+L++ PTRELA Q + L H + IGGT + + +++++ ++V TPGR
Sbjct: 133 ALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGR 192
Query: 427 VYDMITRR---ALHANTIKLFVLDEADEML 507
+ D I A +K+ VLDEAD +L
Sbjct: 193 LKDHIENTPGFATRLKGVKVLVLDEADHLL 222
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 47 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQ 226
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 227 I 229
+
Sbjct: 116 V 116
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 513 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 686
GF+ I + + + Q L SAT+P++V ++ +R + E T+E +Q
Sbjct: 225 GFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQ 282
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 41 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
+TF ++ E++++ + F++P+ IQ A I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 221 QQI 229
Q++
Sbjct: 434 QRL 436
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++L PT ELA Q+ ++ + + GG R + LE GV V++ TPGR
Sbjct: 455 IVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFT 514
Query: 433 DMITRRALHANTIKLFVLDEADEMLSE 513
++ L + ++ +LDE D + +
Sbjct: 515 YLMNEGILGLSNLRCAILDEVDILFGD 541
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 68 EELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQID 232
E +L + GF P+ IQ+ A+ T GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLIN 139
Score = 37.1 bits (82), Expect = 0.012
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Frame = +1
Query: 199 YFLYIDSTTNRYKHS*MSSLILAPTRELAQQIQKV--VIALGDHLNAK-C--HACIGGTN 363
Y L I S N + S + ++I+ PTREL Q+ KV ++A ++ K C A + G
Sbjct: 130 YLLLIFSLINPQRSS-VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGT 188
Query: 364 VREDIRQLES-GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 498
+R L++ ++V T + M+ + +++++ V+DE D
Sbjct: 189 LRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRV 429
+L++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRL 166
Query: 430 YDMITRRA--LHANTIKLFVLDEADEML 507
D + A +H N ++ + DEAD +L
Sbjct: 167 LDHLKNTASFVHKN-LRWVIFDEADSIL 193
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 98 GFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISILQQI 229
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +2
Query: 17 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKT 196
DT + ++ + L + + + GF++PS Q I + + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 197 ATFSISILQQIDTSIRECQV 256
+ I+ Q+ + + +V
Sbjct: 132 HGYLAPIIDQLTNTALDSEV 151
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 573 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETL 731
L SAT+PD V E++R M D VR+++ ++ E +KQ + EE KL L
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLAL 371
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 74 LLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISIL 220
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +1
Query: 253 SLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 432
++IL+P RELA Q + L N D +L V++ TP R+
Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRLK 270
Query: 433 DMITRRALHANTIKLFVLDEADEMLSE 513
I + + + ++ VLDE+D++ +
Sbjct: 271 RAIKAKKIDLSKVEYLVLDESDKLFEQ 297
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 38 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMTCIQGRDVIAQAQSGTGKTATFSISI 217
V F + + ++ RG+ + + +Q AI + GRD++ A++G+GKT F I I
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 218 LQQI 229
L+++
Sbjct: 130 LEKL 133
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 435
+I++PTRELA Q V+ +G IGG + ++ ++++V PGR+
Sbjct: 147 IIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQ 206
Query: 436 -MITRRALHANTIKLFVLDEADEML 507
M +++ +LDEAD +L
Sbjct: 207 HMDETPNFECPQLQILILDEADRVL 231
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 516 FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELT 668
FK Q+ + L Q +L SAT V +++R +RDP I V E +T
Sbjct: 235 FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVT 285
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Frame = +1
Query: 247 MSSLILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL------------- 387
+ +L++ PTR+LA Q++ V A+ + + +G +++ +I QL
Sbjct: 95 LRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYD 154
Query: 388 --------ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSE 513
ES V ++V TPGR+ D I + ++ V+DE D +L E
Sbjct: 155 PDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLRE 205
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 460 HEAHDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 314
H+ H H H+ EC H+H H H +C H H SDHQ
Sbjct: 597 HDHHHHSHSHKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -3
Query: 460 HEAHDELS-YHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELS 305
HE H + S H H+ H HHS H H +C H H +HQ S
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHS------HSHKHEECNHN--HDHEHQSHS 623
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRVY 432
L L P++ A Q++ V AL + + G + I L+S +V TP R+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKG-IGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 433 DMITRRALHANTIKLFVLDEADEMLS 510
+++T + + + + L V+DE + S
Sbjct: 259 EIVTLKGVDISNVSLLVIDELGSLCS 284
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 58 EPQRRIVERHIRLWF*KTFCNPATRNNDLHPRTRCYRSSPVRN---WKNCYFLYIDS-TT 225
E RI + I +W N R D+H T +RS P RN W Y+DS
Sbjct: 186 ESPDRIKKESILIW--NVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGEL 243
Query: 226 NRYK 237
NR K
Sbjct: 244 NRAK 247
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 256 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 360
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 520 LKPLTT-FHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSP 386
L+ LTT +H HQE W E+H DL+ PPP E+ P
Sbjct: 123 LRLLTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 59 NLKEELLRGIYAYGFEKPSAIQQRAIMTCIQ 151
NL EE L ++ Y F+ P A +++C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 59 NLKEELLRGIYAYGFEKPSAIQQRAIMTCIQ 151
NL EE L ++ Y F+ P A +++C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 301 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 414
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 438 HIIYTTWSAHHHMNTTLQLANIFTDIGAT 352
H + T+ A H+N LQLAN GAT
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -3
Query: 163 NIASLDASHYCALLDCRRFFKTIGVYASQQFFFE 62
NI+ ++ C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 364 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 489
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = -1
Query: 507 QHFISFIKNKKFDGVGMKRTTSYHIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSI 328
+H ++F++NK FD G+ +++ T + +++ TN + F I
Sbjct: 110 RHLMAFLRNKGFD-AGLCKSSWERFGKNTGGKYEYVDVRCGGDYNNRYFVETNLAGEFEI 168
Query: 327 QVITKSYHHLLNLLGQLSCGSQDQT*HSRMLVSICC---RIDIEKVAVFPVPDW 175
TK Y +L+ + ++ G+ ++ ++LV I C R ++ V + VP W
Sbjct: 169 ARPTKRYLSILSQVPRVFVGTSEEL---KLLVRIMCHEMRRSMKHVGIH-VPPW 218
>At1g12030.1 68414.m01389 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 295
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Frame = -1
Query: 507 QHFISFIKNKKFDGVGMKRTTSYHIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSI 328
+HF+++++NK FD G+ ++ T + +++ N + I TN + F I
Sbjct: 112 RHFMAYLRNKGFD-AGLCKSRWEKFGKNTAGKYEYVDVKAGDKNRY--IVETNLAGEFEI 168
Query: 327 QVITKSYHHLLNLLGQLSCGSQDQT*HSRMLVSICC---RIDIEKVAVFPVPDW 175
T Y +L + ++ G+ ++ + LV I C R +++ +F VP W
Sbjct: 169 ARPTTRYLSVLAQVPRVFVGTPEEL---KQLVRIMCFEIRRSMKRADIF-VPPW 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,261,565
Number of Sequences: 28952
Number of extensions: 385249
Number of successful extensions: 1275
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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