Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30451
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 103 2e-23
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 99 3e-22
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 30 0.31
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.42
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 2.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 2.9
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 6.8
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 6.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 9.0
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 9.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.0
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 9.0
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 103 bits (248), Expect = 2e-23
Identities = 52/101 (51%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Frame = -1
Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVV 353
L++ KLYR+LARRT+++FN+ +L+RLF S+ NRPPIS+S++A K + EG V+
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVI 84
Query: 352 VGTVTNDVRLYKIPKMTVAALHVTEKARARILALEEKFLLL 230
VGTVT+D RL +PK++VAAL T+ ARARIL + L L
Sbjct: 85 VGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTL 125
Score = 78.2 bits (184), Expect = 9e-16
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = -3
Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 81
AGGE+LT DQLALRAPTG TVL++G+++AREA RHFG P H PYVR++G E
Sbjct: 118 AGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFE 174
Query: 80 KARPSRRA 57
+AR R++
Sbjct: 175 RARGRRKS 182
Score = 33.1 bits (72), Expect = 0.034
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 594 GIDINHKHDRKVRRTEVKSQDIYLRLLV 511
GIDI H RK +R++ S+++YL+LLV
Sbjct: 2 GIDIERHHVRKSQRSKPASENVYLKLLV 29
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 99 bits (238), Expect = 3e-22
Identities = 49/101 (48%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Frame = -1
Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLA--RHMKKPTREGLIAVV 353
L++ KLYR+LARRT+++FN+ +L+RLF S+ NRPPIS+S++A K + + VV
Sbjct: 25 LKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVV 84
Query: 352 VGTVTNDVRLYKIPKMTVAALHVTEKARARILALEEKFLLL 230
VGTVT+D R+ +PK+++AAL T+ ARARIL + L L
Sbjct: 85 VGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTL 125
Score = 79.4 bits (187), Expect = 4e-16
Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = -3
Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 81
AGGE+LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR++G E
Sbjct: 118 AGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFE 174
Query: 80 KARPSRRA 57
+AR R++
Sbjct: 175 RARGRRKS 182
Score = 31.9 bits (69), Expect = 0.078
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 594 GIDINHKHDRKVRRTEVKSQDIYLRLLV 511
GIDI H +K +R++ S+++YL+LLV
Sbjct: 2 GIDIERHHVKKSQRSKPASENVYLKLLV 29
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 29.9 bits (64), Expect = 0.31
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = -3
Query: 353 SGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGAGGEILT-FDQLALRAPTGKKTVLVQG 177
SG+ H TV DT D C+S +++ + L+ FD LR P KT +
Sbjct: 190 SGEYHLRHTTVADTTDSSFCTSISQRNELFAVASQDSSLSVFDVRYLRTPMLTKT-SSRP 248
Query: 176 QRNAREAVRHFGPAPGAP 123
N HF P G P
Sbjct: 249 DPNGSIRSCHFTPPNGGP 266
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.5 bits (63), Expect = 0.42
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 196 RQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKKQGPVVVLM 53
R +YK SE ++ Q + +LQ+ ALT N + + + G +VVL+
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPNLLARTIETVEGGGIVVLL 151
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 349 GTVTNDVRLYKIPKMTVAALHVTEKARARILALEEKFLLLISWL 218
G++T+ V Y + K + + +TEKAR+ L+ E KF L++ L
Sbjct: 754 GSLTHSVE-YVLYKKSKGSQVITEKARSNELSREAKFENLVASL 796
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 227 DQK*EFLLQRQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV---- 394
DQ LL ++ T +FG++ + L +SH CP GN ++L V
Sbjct: 1089 DQFDRLLLLQKGGKTVYFGDIGEHSKTLLNYFESHGAVHCPD-DGNP--AEYILDVIGAG 1145
Query: 395 ARQTRHRDWWPV 430
A T +RDW V
Sbjct: 1146 ATATTNRDWHEV 1157
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 259 LALEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 116
L L F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 133 LLLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 559 SAHRS*ISRYLLEVTCKLYRYLARRTNAKFNQIV 458
+ HR+ ++ EV + Y YLA T AK++QI+
Sbjct: 309 ATHRAEVADAASEVHSE-YNYLAADTGAKYDQII 341
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 81 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 242
F+S G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 631 FLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 254 RQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHVARQTRHRDWWPVD 433
R + T F+GN S HL Y H+I H +T+ S+ H+ ++ D ++
Sbjct: 282 RYSILTHFYGNALSIIEHLIYQKDFHLISPL-HLTTLRTVPSFQRHIEQRLEIGDLESIN 340
Query: 434 TAHK 445
K
Sbjct: 341 YVEK 344
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 230 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 135
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 367 LIAVVVGTVTNDVRLYKI 314
L+ +VV +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 326 TVQDTEDDGGCSSCYRKSSCTHFGAGGE 243
T+ D+EDD + + CT+ GG+
Sbjct: 51 TLNDSEDDNSSLNSVDNNECTNLDCGGK 78
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 535 LRFNFGAPNFPVVFMIDVNTLVPNS 609
++ N+G PN+ ++ + V+ VPN+
Sbjct: 466 IKSNWGNPNYTCLYQVRVHGTVPNA 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,785
Number of Sequences: 5004
Number of extensions: 56795
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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